Browse Element(s) Details


Os.18202.1.S1_at

Description gb:AK103687.1
DB_XREF= gi:32988896
TID=Os.18202.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18202 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033136F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136F22, full insert sequence.
FL= gb:AK103687.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0986011/11acetyltransferase, GNAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g09820OsAffx.25028.1.S1_at11/113+4865505..4866431Transcription factor TFIIB repeat family protein
LOC_Os03g09830OsAffx.3177.1.S1_at11/113+4868609..4871374expressed protein
LOC_Os03g09830OsAffx.3177.2.S1_x_at1/113+4868609..4871374expressed protein
LOC_Os03g09830OsAffx.3177.2.S1_at1/113+4868609..4871374expressed protein
LOC_Os03g09840Os.15761.1.S1_at11/113+4873640..4876148C2 domain-containing protein, putative, expressed
LOC_Os03g09850OsAffx.3178.1.S1_at11/113+4881472..4882725auxin-responsive protein, putative, expressed
LOC_Os03g09860Os.18202.1.S1_at11/113+4885363..4887908acetyltransferase, GNAT family protein, expressed
LOC_Os03g09870OsAffx.3179.1.S1_s_at11/113+4888771..4891471mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed
LOC_Os03g09880Os.49607.1.S1_at11/113+4892431..4893180membrane protein, putative, expressed
LOC_Os03g09900Os.20151.1.S1_at11/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09900Os.20151.2.S1_at11/113+4903067..4905199membrane protein, putative, expressed
LOC_Os03g09900OsAffx.30514.2.S1_s_at1/113+4903067..4905199membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18202.1.S1_at--176--7991Chr03:4887056..4887080 (25 bp)
GGATGCTTCGTATAGTTCAGTGTTT
LOC_Os03g09860
Os.18202.1.S1_at--1117--6131Chr03:4887398..4887421 (24 bp)
GAGGTGACACTGGAGGCACCCGCAA
LOC_Os03g09860
Os.18202.1.S1_at--370--5151Chr03:4887418..4887442 (25 bp)
GCAACTGCACTACCATTGGTTTCTC
LOC_Os03g09860
Os.18202.1.S1_at--380--8571Chr03:4887434..4887458 (25 bp)
TGGTTTCTCCTCTGACCATAGGAAA
LOC_Os03g09860
Os.18202.1.S1_at--199--5551Chr03:4887526..4887550 (25 bp)
GAAACTAACTGCGTTCCATGCTAAA
LOC_Os03g09860
Os.18202.1.S1_at--586--3851Chr03:4887551..4887575 (25 bp)
CTGACTACTGTATTATCTGCCCAAC
LOC_Os03g09860
Os.18202.1.S1_at--160--9831Chr03:4887595..4887619 (25 bp)
TAAACTTGTGTAGGCTTCTCGACTG
LOC_Os03g09860
Os.18202.1.S1_at--1051--911Chr03:4887606..4887630 (25 bp)
AGGCTTCTCGACTGCAACGTGATGC
LOC_Os03g09860
Os.18202.1.S1_at--424--4631Chr03:4887758..4887782 (25 bp)
GCGATGCATTGCTCACACTGTATAC
LOC_Os03g09860
Os.18202.1.S1_at--361--9611Chr03:4887796..4887820 (25 bp)
TCATGCATGGCACGAGAACACTTTT
LOC_Os03g09860
Os.18202.1.S1_at--240--5971Chr03:4887809..4887833 (25 bp)
GAGAACACTTTTCAGTTAGCCAGAA
LOC_Os03g09860
Target Sequence 
GGATGCTTCGTATAGTTCAGTGTTTAAGGAGGTGACACTGGAGGCACCCGCAACTGCACTACCATTGGTTTCTCCTCTGA
CCATAGGAAACTGGTGACATCTGAGTATCTGACTAAATTTCCGAAGCAGTTATTGGTGTTCCTCAACTGGGAAACAGGAA
ACTAACTGCGTTCCATGCTAAACTGACTACTGTATTATCTGCCCAACAATTTGCTTGGGATTAGAATAAACTTGTGTAGG
CTTCTCGACTGCAACGTGATGCTGNAACGGTTTGNAACTTTTGATGGTGTGATGTNGTATATGTAGGGAGCTACCCGTGA
NGTTTTTCAAGAGANNTTTTCNACCACAAGGTGTGGAANANGTTGCAGTAATCTCTAGAAAGTTTATGAAGGCGATGCAT
TGCTCACACTGTATACATATACATCGTTATCATGCATGGCACGAGAACACTTTTCAGTTAGCCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis