Browse Element(s) Details


Os.18250.1.S1_at

Description gb:NM_192628.1
DB_XREF= gi:34912339
GEN=P0518F01.4
TID=Os.18250.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18250 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0518F01.4 (P0518F01.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0518F01.4 (P0518F01.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4160011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41570OsAffx.23623.1.S1_x_at11/111+23857442..23864963PP-loop family protein
LOC_Os01g41570OsAffx.23623.1.S1_at10/111+23857442..23864963PP-loop family protein
LOC_Os01g41580OsAffx.8572.1.S1_s_at11/111+23872400..23873785transposase, putative
LOC_Os01g41580OsAffx.8572.1.S1_at5/111+23872400..23873785transposase, putative
LOC_Os01g41590NANA1+23874092..23875942hypothetical protein
LOC_Os01g41600Os.18250.1.S1_at11/111+23878818..23881100expressed protein
LOC_Os01g41600OsAffx.28171.1.S1_at4/111+23878818..23881100expressed protein
LOC_Os01g41600OsAffx.24197.1.S1_x_at1/111+23878818..23881100expressed protein
LOC_Os01g41610Os.11314.1.S1_at11/111+23881114..23884502mitochondrial ATP synthase g subunit family protein, putative, expressed
LOC_Os01g41620Os.38395.3.S1_x_at9/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.4.S1_x_at8/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.2.S1_x_at7/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41620Os.38395.1.S1_at1/111+23888553..23894177transposon protein, putative, Mutator sub-class
LOC_Os01g41630Os.12773.1.S1_at11/111+23896960..23903388Protein phosphatase PP2A regulatory subunit B, putative, expressed
LOC_Os01g41640Os.7404.1.S1_a_at11/111+23904085..23907377expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18250.1.S1_at--82--8091Chr01:23880581..23880605 (25 bp)
GGAGCTGGCCGTGCTGTCCATCAGC
LOC_Os01g41600
Os.18250.1.S1_at--983--7771Chr01:23880650..23880674 (25 bp)
GGTGCTGTTCCTCTTCACCAGGAAG
LOC_Os01g41600
Os.18250.1.S1_at--924--5951Chr01:23880707..23880731 (25 bp)
GAGCAAGGGCTGGATCCTCGTACTG
LOC_Os01g41600
Os.18250.1.S1_at--535--7971Chr01:23880718..23880742 (25 bp)
GGATCCTCGTACTGGCAAGCAGCAG
LOC_Os01g41600
Os.18250.1.S1_at--619--2691Chr01:23880734..23880758 (25 bp)
AAGCAGCAGCTTCACTACTTTCCTA
LOC_Os01g41600
Os.18250.1.S1_at--718--10672Chr01:23880753..23880777 (25 bp)
TTCCTAGTGCTGCTATACAACTGAA
LOC_Os01g41600
Os.18250.1.S1_at--158--8691Chr01:23880865..23880889 (25 bp)
TGTCCCGGTTGATCTACGTTAGGTT
LOC_Os01g41600
Os.18250.1.S1_at--628--3891Chr01:23880899..23880923 (25 bp)
CTGGCTGTTACCGAGGAAGTACTAG
LOC_Os01g41600
Os.18250.1.S1_at--966--6831Chr01:23880946..23880970 (25 bp)
GTATTCAGGAAGACCCCGGTTCTAT
LOC_Os01g41600
Os.18250.1.S1_at--1108--5471Chr01:23881022..23881046 (25 bp)
GAACAGTACTGACGCTTTCATCGTT
LOC_Os01g41600
Os.18250.1.S1_at--258--10331Chr01:23881037..23881061 (25 bp)
TTTCATCGTTTCTAGCTGCACAACA
LOC_Os01g41600
Target Sequence 
GGAGCTGGCCGTGCTGTCCATCAGCCTCTTCTTCGCGTGCCTGGCGCTGTTCAAGCTGGCGTGCGACAGGGTGCTGTTCC
TCTTCACCAGGAAGGGGGCGGCGGCGGCGGAGAGGATGTGCGGGGCGAGCAAGGGCTGGATCCTCGTACTGGCAAGCAGC
AGCTTCACTACTTTCCTAGTGCTGCTATACAACTGAANCCCACCCAACTCACCTTAGGAACANCTTTTCTTTTCTTTTTT
ACCATTTTTCTGCTANCTTTGTCGCCACGTTCTCCTGTANANCTTGTCCCGGTTGATCTACGTTAGGTTGTTGTTANCCT
GGCTGTTACCGAGGAAGTACTAGTGATTTGGAAATAAAAGTGCCGGTATTCAGGAAGACCCCGGTTCTATAAGTAAGATA
ATTAGATATTCATTGTTTAAAGCAAACTCTAACGAGCAATAGAACAGTACTGACGCTTTCATCGTTTCTAGCTGCACAAC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18250.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis