Browse Element(s) Details


Os.18406.1.S1_at

Description gb:AK105325.1
DB_XREF= gi:32990534
TID=Os.18406.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18406 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-H09, full insert sequence.
FL= gb:AK105325.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4022011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40160OsAffx.28837.1.S1_at11/117+24096468..24097408expressed protein
LOC_Os07g40170OsAffx.28838.1.S1_x_at11/117+24099736..24100373hypothetical protein
LOC_Os07g40180OsAffx.28839.1.S1_x_at11/117+24102045..24102605hypothetical protein
LOC_Os07g40200OsAffx.828.1.S1_x_at1/117+24107761..24109043hypothetical protein
LOC_Os07g40210NANA7+24109661..24113126retrotransposon protein, putative, LINE subclass
LOC_Os07g40220Os.18406.1.S1_at11/117+24113939..24114952expressed protein
LOC_Os07g40230OsAffx.28841.1.S1_at5/117+24120326..24120808hypothetical protein
LOC_Os07g40240Os.48981.1.S1_at11/117+24123638..24125792snakin-1, putative, expressed
LOC_Os07g40250Os.55363.1.S1_at11/117+24126672..24127927NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40250OsAffx.22529.1.S1_s_at1/117+24126672..24127927NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40260Os.56998.1.S1_at11/117+24127960..24135626aspartyl protease family protein, putative, expressed
LOC_Os07g40260Os.37844.1.S1_at11/117+24127960..24135626aspartyl protease family protein, putative, expressed
LOC_Os07g40270Os.26434.1.S1_at11/117+24136223..24141217hydroxyproline-rich glycoprotein family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18406.1.S1_at--331--3371Chr07:24114326..24114350 (25 bp)
CACCTCGCGAGCGTGCTGCTGATGG
LOC_Os07g40220
Os.18406.1.S1_at--388--4011Chr07:24114541..24114664 (25 bp)
CGTCCTGCGTTACGTGCGTGTGAAC
LOC_Os07g40220
Os.18406.1.S1_at--386--1291Chr07:24114681..24114705 (25 bp)
AGATCGATGTGTACCGTGTTCGTCG
LOC_Os07g40220
Os.18406.1.S1_at--700--5851Chr07:24114713..24114737 (25 bp)
GACCAGATCAACCAGATTCAGTCGA
LOC_Os07g40220
Os.18406.1.S1_at--482--8331Chr07:24114751..24114775 (25 bp)
GGCGTTTAAGTAGCTAGTCGTGTTA
LOC_Os07g40220
Os.18406.1.S1_at--296--4871Chr07:24114801..24114825 (25 bp)
GCTAGTCGTGTTGTGTATCTCGGTT
LOC_Os07g40220
Os.18406.1.S1_at--533--10151Chr07:24114816..24114840 (25 bp)
TATCTCGGTTGTTGATGGGCACGGA
LOC_Os07g40220
Os.18406.1.S1_at--461--8651Chr07:24114831..24114855 (25 bp)
TGGGCACGGATGTTGTGTGTTCCAC
LOC_Os07g40220
Os.18406.1.S1_at--532--731Chr07:24114840..24114864 (25 bp)
ATGTTGTGTGTTCCACTGTGACGTC
LOC_Os07g40220
Os.18406.1.S1_at--811--1951Chr07:24114854..24114878 (25 bp)
ACTGTGACGTCCTTTGTGGTTCTTG
LOC_Os07g40220
Os.18406.1.S1_at--491--3631Chr07:24114875..24114899 (25 bp)
CTTGCTTGGCCACTAGAACATGTAA
LOC_Os07g40220
Target Sequence 
CACCTCGCGAGCGTGCTGCTGATGGATGAGAAGAAGAAGAGGAATCCGCCGGCGGCGAGCTGGGTCGCGTGGCNNNNNGC
CGTCANGTACCTNGTGCGTCCGTCTCCGGCATGTTCCTCGCCTACATCAGCTACGGCGGCTTCGTGGCGGCGACCTCGCT
GGAGTGGCCGGTGGCCGGCGTCGCCTCCGCNCGTCAACCTCGCCGTCGCCGCGTGCACCGTCCTGCGTTACGTGCGTGTG
AACGGGGATATGGACGGTTAGATCGATGTGTACCGTGTTCGTCGTCGTGTCGACCAGATCAACCAGATTCAGTCGATGGG
AAGGATCATGGCGTTTAAGTAGCTAGTCGTGTTATCTAGTACTAGTAGCTTCATATGTAGCTAGTCGTGTTGTGTATCTC
GGTTGTTGATGGGCACGGATGTTGTGTGTTCCACTGTGACGTCCTTTGTGGTTCTTGCTTGGCCACTAGAACATGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis