Browse Element(s) Details

Os.18407.1.S1_at

Description

gb:AK108268.1
DB_XREF= gi:32993477
TID=Os.18407.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18407 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B12, full insert sequence.
FL= gb:AK108268.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os02g58550	11/11	chloroplast channel forming outer membrane protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os02g58480	Os.52194.1.S1_at	11/11	2	+	35749077..35755347	Sucrose synthase 2, putative, expressed
LOC_Os02g58480	Os.51168.1.S1_at	11/11	2	+	35749077..35755347	Sucrose synthase 2, putative, expressed
LOC_Os02g58490	Os.7419.1.S1_a_at	11/11	2	+	35755309..35762519	PINHEAD protein, putative, expressed
LOC_Os02g58500	Os.4603.1.S1_at	11/11	2	+	35764745..35766255	phospholipase A2, putative, expressed
LOC_Os02g58510	Os.27193.1.S1_at	11/11	2	+	35766329..35768918	homoserine kinase family protein, expressed
LOC_Os02g58520	Os.24128.1.A1_at	11/11	2	+	35769161..35771397	Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os02g58530	OsAffx.3105.1.S1_at	11/11	2	+	35773561..35775519	major facilitator superfamily protein, expressed
LOC_Os02g58540	OsAffx.24924.1.S1_at	11/11	2	+	35777415..35778267	Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g58550	Os.47401.1.A1_s_at	11/11	2	+	35778974..35781951	chloroplast channel forming outer membrane protein, putative, expressed
LOC_Os02g58550	Os.18407.1.S1_at	11/11	2	+	35778974..35781951	chloroplast channel forming outer membrane protein, putative, expressed
LOC_Os02g58560	OsAffx.24925.1.S1_at	11/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560	OsAffx.24925.1.S1_x_at	11/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560	Os.50372.1.S2_x_at	11/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560	Os.17864.1.S1_at	11/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560	Os.38768.1.A1_at	10/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560	Os.50372.1.S1_at	10/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58560	Os.38768.1.A1_s_at	10/11	2	+	35784293..35798625	glycosyl transferase family 48 protein, putative, expressed
LOC_Os02g58570	Os.19421.1.S1_at	11/11	2	+	35798862..35800671	PRLI-interacting factor A, putative, expressed
LOC_Os02g58580	Os.38243.1.S1_at	11/11	2	+	35801176..35806577	Metal tolerance protein C2, putative, expressed
LOC_Os02g58580	Os.8441.1.S1_s_at	11/11	2	+	35801176..35806577	Metal tolerance protein C2, putative, expressed
LOC_Os02g58580	Os.8441.1.S1_at	11/11	2	+	35801176..35806577	Metal tolerance protein C2, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009941	cellular_component	chloroplast envelope

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.18407.1.S1_at--1058--71	1	Chr02:35779185..35779209 (25 bp)	ATGTTGCATCGTGAGAAGAACCGGA	LOC_Os02g58550
Os.18407.1.S1_at--1034--425	1	Chr02:35779165..35779189 (25 bp)	CCGGAGGACCGGATAGCATGCTGTT	LOC_Os02g58550
Os.18407.1.S1_at--638--1001	1	Chr02:35779152..35779176 (25 bp)	TAGCATGCTGTTGGGCACATTGGAA	LOC_Os02g58550
Os.18407.1.S1_at--492--207	1	Chr02:35779136..35779160 (25 bp)	ACATTGGAATGCACGGCCGATTTCT	LOC_Os02g58550
Os.18407.1.S1_at--849--841	1	Chr02:35779122..35779146 (25 bp)	GGCCGATTTCTCATCCTTAAACAAG	LOC_Os02g58550
Os.18407.1.S1_at--385--107	1	Chr02:35779095..35779119 (25 bp)	AGTGGTACTACTTTTAATTGGATGA	LOC_Os02g58550
Os.18407.1.S1_at--391--731	1	Chr02:35779049..35779073 (25 bp)	GTGCAGTTGTATTTGGGTCACCTGT	LOC_Os02g58550
Os.18407.1.S1_at--799--863	1	Chr02:35779036..35779060 (25 bp)	TGGGTCACCTGTTGTAGCTCGTTAA	LOC_Os02g58550
Os.18407.1.S1_at--125--1001	1	Chr02:35779022..35779046 (25 bp)	TAGCTCGTTAATGCCTTCTGTGTGT	LOC_Os02g58550
Os.18407.1.S1_at--493--303	1	Chr02:35779013..35779037 (25 bp)	AATGCCTTCTGTGTGTTGTGGACCC	LOC_Os02g58550
Os.18407.1.S1_at--990--1081	1	Chr02:35778998..35779022 (25 bp)	TTGTGGACCCTGTCAGTTGGACTGA	LOC_Os02g58550

Target Sequence

ATGTTGCATCGTGAGAAGAACCGGAGGACCGGATAGCATGCTGTTGGGCACATTGGAATGCACGGCCGATTTCTCATCCT
TAAACAAGTAAGTGGTACTACTTTTAATTGGATGAGTTCATAATTGAAAACCATTTGTGCAGTTGTATTTGGGTCACCTG
TTGTAGCTCGTTAATGCCTTCTGTGTGTTGTGGACCCTGTCAGTTGGACTGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis