Browse Element(s) Details


Os.18450.1.S1_s_at

Description gb:AK100958.1
DB_XREF= gi:32986167
TID=Os.18450.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18450 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023140K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023140K23, full insert sequence.
FL= gb:AK100958.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3470011/11GDSL-motif lipase/hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34660OsAffx.14961.1.S1_at10/115+20481717..20482306hypothetical protein
LOC_Os05g34670Os.18517.1.S1_at11/115+20485736..20490481KH domain-containing quaking protein, putative, expressed
LOC_Os05g34680OsAffx.4518.1.S1_s_at11/115+20497882..20499899expressed protein
LOC_Os05g34680Os.48343.1.A1_at6/115+20497882..20499899expressed protein
LOC_Os05g34690OsAffx.14962.1.S1_at11/115+20500837..20502255hypothetical protein
LOC_Os05g34700Os.18450.1.S1_s_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.18450.1.S1_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.51561.1.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.28229.2.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34710Os.51244.1.S1_at11/115+20508160..20508951expressed protein
LOC_Os05g34720Os.27206.1.S1_at10/115+20512490..20515635Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os05g34730OsAffx.27165.1.S1_at11/115+20518075..20518668AP2 domain containing protein, expressed
LOC_Os05g34740NANA5+20522157..20522465hypothetical protein
LOC_Os05g34750NANA5+20532111..20535654retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18450.1.S1_s_at--1083--4351Chr05:20507219..20507243 (25 bp)
CCACGGAGAGGGTCAACATCTTGCT
LOC_Os05g34700
Os.18450.1.S1_s_at--444--3911Chr05:20507336..20507360 (25 bp)
CGGCGGTCGTGACATATATCCTCTC
LOC_Os05g34700
Os.18450.1.S1_s_at--214--3572Chr05:20507408..20507432 (25 bp)
CATATCTCAGTACTACGAATTTAGA
LOC_Os05g34700
Os.18450.1.S1_s_at--199--10454Chr05:20507445..20507469 (25 bp)
TTAGATTCGTAGTATGTGTTACATC
LOC_Os05g34700
Os.18450.1.S1_s_at--345--152Chr05:20507487..20507511 (25 bp)
ATTATGTGACGGATGAAGTACTTAG
LOC_Os05g34700
Os.18450.1.S1_s_at--61--7011Chr05:20507504..20507528 (25 bp)
GTACTTAGGGTATGAATCTATTCGT
LOC_Os05g34700
Os.18450.1.S1_s_at--568--5251Chr05:20507517..20507541 (25 bp)
GAATCTATTCGTTTTTGCATGCAGT
LOC_Os05g34700
Os.18450.1.S1_s_at--579--4991Chr05:20507533..20507557 (25 bp)
GCATGCAGTGTTACTATGTTGTTGT
LOC_Os05g34700
Os.18450.1.S1_s_at--714--7431Chr05:20507612..20507636 (25 bp)
GTGTTTGTGTGCTCAGTTTGGATTA
LOC_Os05g34700
Os.18450.1.S1_s_at--817--3731Chr05:20507623..20507647 (25 bp)
CTCAGTTTGGATTAGGGCAAGTGCT
LOC_Os05g34700
Os.18450.1.S1_s_at--110--3231Chr05:20507640..20507664 (25 bp)
CAAGTGCTGCTTGTGTTTGTACTAC
LOC_Os05g34700
Target Sequence 
CCACGGAGAGGGTCAACATCTTGCTCGGCAAGGNAGCCTACTCCGGCGGNGCCGANCTCGTNCACCCCATGAACATNCAG
CAGCTCGCCGCCTGGCAGCCGTAGCNGCTGTCGCCGCCGGCGGTCGTGACATATATCCTCTCTCTTACTCTCTTCGTCCC
GAAATATAAAGAATTTTGGATGAATAAGACATATCTCAGTACTACGAATTTAGATATGAAGTCTGATTAGATTCGTAGTA
TGTGTTACATCCATCCAAAATCTTTTCTATTATGTGACGGATGAAGTACTTAGGGTATGAATCTATTCGTTTTTGCATGC
AGTGTTACTATGTTGTTGTAGCTAGGTAGGGGGTGAGCTAATGAACGAGCTGGGGTGGTGTTTGTTTGTGGGTGTGTTTG
TGTGCTCAGTTTGGATTAGGGCAAGTGCTGCTTGTGTTTGTACTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18450.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis