Browse Element(s) Details


Os.18498.1.S1_at

Description gb:AK101599.1
DB_XREF= gi:32986808
TID=Os.18498.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.18498 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 20818 TaWIN2-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033051I09, full insert sequence.
FL= gb:AY224434.1 gb:AK101599.1 gb:AY224524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3749010/1114-3-3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37456Os.11122.1.S1_at11/118+23590772..23594404oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g37470OsAffx.17379.1.S1_at11/118+23597959..23599250hypothetical protein
LOC_Os08g37480Os.10066.1.A1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10748.1.S1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10066.2.S1_at11/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.10066.1.A1_x_at10/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37480Os.13501.1.S1_at1/118+23608616..23614134Surfeit locus protein 5 containing protein, expressed
LOC_Os08g37490Os.18498.1.S1_at10/118+23617494..2361966214-3-3, putative, expressed
LOC_Os08g37520Os.49968.1.S1_at11/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.2.S1_x_at11/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.1.S2_at10/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.49968.2.S1_at9/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37520Os.54805.2.S1_at1/118+23623108..23630903pentatricopeptide, putative, expressed
LOC_Os08g37500Os.24493.1.A1_at11/118+23623306..23625301expressed protein
LOC_Os08g37530NANA8+23634567..23640677retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g37540NANA8+23640993..23643918retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005635cellular_componentnuclear envelope
GO:0005737cellular_componentcytoplasm
GO:0005886cellular_componentplasma membrane
GO:0009570cellular_componentchloroplast stroma
GO:0005515molecular_functionprotein binding
GO:0045309molecular_functionprotein phosphorylated amino acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18498.1.S1_at--441--891Chr08:23618075..23618205 (25 bp)
AGGCCGCGCAGGACATAGCCATGAA
LOC_Os08g37490
Os.18498.1.S1_at--504--4391NONE
GCCAAGCAGGCCTTCGATGAAGCTA
NONE
Os.18498.1.S1_at--780--4871Chr08:23619145..23619169 (25 bp)
GCTATTTCGGAACTGGATACCCTTG
LOC_Os08g37490
Os.18498.1.S1_at--125--3651Chr08:23619211..23619235 (25 bp)
CTTCGCGACAATCTCACTTTGTGGA
LOC_Os08g37490
Os.18498.1.S1_at--273--3331Chr08:23619225..23619249 (25 bp)
CACTTTGTGGACTTCTGATATGCAG
LOC_Os08g37490
Os.18498.1.S1_at--809--2791Chr08:23619404..23619428 (25 bp)
AAGATCCTAGTGACAGTCGTCTGTC
LOC_Os08g37490
Os.18498.1.S1_at--738--411Chr08:23619418..23619442 (25 bp)
AGTCGTCTGTCTCTTAACCGCTGGG
LOC_Os08g37490
Os.18498.1.S1_at--893--10411Chr08:23619516..23619540 (25 bp)
TTATATTGCTATCGCCATCCTCATG
LOC_Os08g37490
Os.18498.1.S1_at--111--171Chr08:23619542..23619566 (25 bp)
ATTATTTGTTACTTTCCTGCTGGAA
LOC_Os08g37490
Os.18498.1.S1_at--460--3831Chr08:23619558..23619582 (25 bp)
CTGCTGGAATCCTGCTCGTGTGTGG
LOC_Os08g37490
Os.18498.1.S1_at--1128--6011Chr08:23619583..23619607 (25 bp)
GAGAGTGCCTCAAGCCTTTAACTAG
LOC_Os08g37490
Target Sequence 
AGGCCGCGCAGGACATAGCCATGAAGGAGCTGTCGCCGACGCACCCCATCAGACTGGGCCTTGCGCTCAACTTCTCCGTG
TTCTACTACGAGATCCTCAACTCGCCCGACCGCGCGTGCACGCTCGCCAAGCAGGCCTTCGATGAAGCTATTTCGGAACT
GGATACCCTTGGGGAAGAATCCTACAAGGACAGCACCCTGATCATGCAGCTTCTTCGCGACAATCTCACTTTGTGGACTT
CTGATATGCAGGACGATGGAGGTGATGAAATGAGGGATGCAACCAAGCCTGAGGATGAGCACTANGCTAAAGATCCTAGT
GACAGTCGTCTGTCTCTTAACCGCTGGGGGTAGTTATGATGCTTGTACAAGGACCATTTTCTTGTGTCCTTTCGTCGGGT
CTTTGCTTACCCTTTGTTTACTTATATTGCTATCGCCATCCTCATGTATTATTTGTTACTTTCCTGCTGGAATCCTGCTC
GTGTGTGGGAGAGTGCCTCAAGCCTTTAACTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis