Browse Element(s) Details


Os.18558.1.S1_at

Description gb:AK103066.1
DB_XREF= gi:32988275
TID=Os.18558.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117P10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117P10, full insert sequence.
FL= gb:AK103066.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5277010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52720Os.53148.1.S1_at11/113+30174754..30176904magnesium-dependent phosphatase-1 family protein, expressed
LOC_Os03g52730Os.21398.1.S1_at11/113+30178817..30180732magnesium-dependent phosphatase-1 family protein, expressed
LOC_Os03g52740Os.35344.3.S1_x_at5/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52740Os.35344.18.S1_x_at5/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52740OsAffx.22940.5.S1_x_at1/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52750Os.3905.1.S1_at11/113+30186454..30191750Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g52760Os.18432.1.A1_s_at11/113+30194828..30197720kinase, pfkB family protein, expressed
LOC_Os03g52770Os.18558.1.S1_at10/113+30199506..30209087expressed protein
LOC_Os03g52780Os.4911.1.S1_s_at11/113+30209402..30212697expressed protein
LOC_Os03g52794OsAffx.13472.1.S1_at11/113+30213036..30231073Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os03g52794Os.22566.1.A1_at11/113+30213036..30231073Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os03g52794OsAffx.30488.1.S1_at1/113+30213036..30231073Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os03g52810NANA3+30232543..30238700retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18558.1.S1_at--231--491Chr03:30208273..30208297 (25 bp)
ATCTGTAATTTCTGCTGTCCTCAAG
LOC_Os03g52770
Os.18558.1.S1_at--738--211Chr03:30208321..30208345 (25 bp)
ATTTGTTCGGCTTCAGACATTCAAC
LOC_Os03g52770
Os.18558.1.S1_at--101--5231Chr03:30208379..30208403 (25 bp)
GAATTTCTCAAGACATCCCTTAAGG
LOC_Os03g52770
Os.18558.1.S1_at--390--4831Chr03:30208758..30208782 (25 bp)
GCTCACGAGAGATGTCTTGACCCAA
LOC_Os03g52770
Os.18558.1.S1_at--247--9511Chr03:30208787..30208811 (25 bp)
TCTCGAGCCGCCCATATTGGATAAG
LOC_Os03g52770
Os.18558.1.S1_at--726--11Chr03:30208875..30208899 (25 bp)
ATTGGTTATTCCTTCCCCTAGCAAT
LOC_Os03g52770
Os.18558.1.S1_at--480--1211Chr03:30208901..30208925 (25 bp)
AGTTTCATCTGGTCATACACCGTTC
LOC_Os03g52770
Os.18558.1.S1_at--636--8971Chr03:30208965..30208989 (25 bp)
TGAACCAACTCACCCCGAAAATGTA
LOC_Os03g52770
Os.18558.1.S1_at--826--7071Chr03:30208987..30209011 (25 bp)
GTAATACTATGTTGAGCTCTCAGCA
LOC_Os03g52770
Os.18558.1.S1_at--351--6791Chr03:30209026..30209050 (25 bp)
GTTAGTCTTGTGTGCATTGTCTCGA
LOC_Os03g52770
Os.18558.1.S1_at--894--1131Chr03:30209099..30209123 (25 bp)
AGTCCACCGTCCACATTAATTCAAT
NONE
Target Sequence 
ATCTGTAATTTCTGCTGTCCTCAAGCTCTGCCTGAAAAGCTTGCAAGAATTTGTTCGGCTTCAGACATTCAACAGAAGTG
GATTTCAGCAAATTCAGCTGGATATGGAATTTCTCAAGACATCCCTTAAGGAGTTTGTTGATGATGAAGCAGCTATTAGC
TTTTTACTTAAAGAGGTGAACAATGCTGCTCACGAGAGATGTCTTGACCCAATCCCTCTCGAGCCGCCCATATTGGATAA
GCTCATCAGTGCAAAACTAGCAAAGATTAAAGAGCAAAGTCCAAATATGCAGTANCTACGCCCAATTGGTTATTCCTTCC
CCTAGCAATCAGTTTCATCTGGTCATACACCGTTCACAGCTATGTGCATATGTAAATCTGTCAAACACTCAAACTGAACC
AACTCACCCCGAAAATGTAATACTATGTTGAGCTCTCAGCATCGAGAAATGCTCTGTTAGTCTTGTGTGCATTGTCTCGA
GTTCAGGGGAAATATTGATGATCAAGGACTTGAATTTAATCAAACGTGAGTCCACCGTCCACATTAATTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis