Browse Element(s) Details


Os.18639.1.S1_at

Description gb:AK061178.1
DB_XREF= gi:32971196
TID=Os.18639.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18639 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-209-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-D01, full insert sequence.
FL= gb:AK059292.1 gb:AK061178.1 gb:AK121552.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1376011/11Small nuclear ribonucleoprotein Sm D3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13710OsAffx.22940.2.S1_s_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710Os.35344.3.S1_x_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.1.S1_s_at11/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710Os.35344.18.S1_x_at10/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.5.S1_x_at10/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.5.S1_at9/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.3.S1_x_at9/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.22940.2.S1_at7/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13710OsAffx.31552.2.S1_at1/113+7397137..7404689transposon protein, putative, Mutator sub-class
LOC_Os03g13720Os.10452.1.S1_at11/113+7409707..7412707expressed protein
LOC_Os03g13730OsAffx.3231.1.S1_at11/113+7413096..7417135Translocase of chloroplast 34, putative, expressed
LOC_Os03g13730Os.8640.1.S1_at11/113+7413096..7417135Translocase of chloroplast 34, putative, expressed
LOC_Os03g13730OsAffx.28716.1.S1_s_at1/113+7413096..7417135Translocase of chloroplast 34, putative, expressed
LOC_Os03g13740Os.6244.1.S1_x_at11/113+7419455..7421070U-box domain containing protein, expressed
LOC_Os03g13740Os.6244.1.S1_at11/113+7419455..7421070U-box domain containing protein, expressed
LOC_Os03g13750Os.10466.1.S1_at10/113+7425053..7428664expressed protein
LOC_Os03g13750OsAffx.12845.1.S1_at9/113+7425053..7428664expressed protein
LOC_Os03g13760Os.18639.1.S1_at11/113+7428850..7432091Small nuclear ribonucleoprotein Sm D3, putative, expressed
LOC_Os03g13770Os.27347.1.S1_a_at11/113+7432674..7436825expressed protein
LOC_Os03g13780Os.35344.18.S1_x_at9/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13780Os.35344.3.S1_x_at9/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13780OsAffx.22940.5.S1_x_at3/113+7437731..7443905transposon protein, putative, Mutator sub-class
LOC_Os03g13790Os.14693.1.S2_at11/113+7448669..7454495myb family transcription factor, putative, expressed
LOC_Os03g13790Os.14693.1.S1_at11/113+7448669..7454495myb family transcription factor, putative, expressed
LOC_Os03g13800Os.12755.2.S1_s_at10/113+7455335..7457261NHP2-like protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005732cellular_componentsmall nucleolar ribonucleoprotein complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18639.1.S1_at--348--7951Chr03:7429406..7429430 (25 bp)
GGATATGCTCAAGAACGCACCCATG
LOC_Os03g13760
Os.18639.1.S1_at--25--7191Chr03:7431692..7431716 (25 bp)
GTCTGTCATCTATTATCTGCCTGAG
LOC_Os03g13760
Os.18639.1.S1_at--477--7471Chr03:7431765..7431789 (25 bp)
GTGTGCATCTTGTCTGATCAATCCG
LOC_Os03g13760
Os.18639.1.S1_at--92--3531Chr03:7431804..7431828 (25 bp)
CATGCATGTTGGTGGCGTCGATTTC
LOC_Os03g13760
Os.18639.1.S1_at--17--9011Chr03:7431906..7431930 (25 bp)
TGAATGACAAGACCAGTTTCCCCTG
LOC_Os03g13760
Os.18639.1.S1_at--234--5871Chr03:7431936..7431960 (25 bp)
GAGCGAATTTCCTTTTGTATCTACC
LOC_Os03g13760
Os.18639.1.S1_at--171--6911Chr03:7431952..7431976 (25 bp)
GTATCTACCAGTTTAGTGGCCGTTT
LOC_Os03g13760
Os.18639.1.S1_at--943--8451Chr03:7431968..7431992 (25 bp)
TGGCCGTTTGGAACGCAGTGATTCT
LOC_Os03g13760
Os.18639.1.S1_at--1159--751Chr03:7432001..7432025 (25 bp)
ATGTGCTCCAAAGGCCTAGTGGTTA
LOC_Os03g13760
Os.18639.1.S1_at--209--7511Chr03:7432019..7432043 (25 bp)
GTGGTTATCTGGCAACTTCCTGAAT
LOC_Os03g13760
Os.18639.1.S1_at--4--3651Chr03:7432034..7432058 (25 bp)
CTTCCTGAATCGGATGCTTCTTATA
LOC_Os03g13760
Target Sequence 
GGATATGCTCAAGAACGCACCCATGTTCAAGCGCCTGGAAGCAAGGATTAGGGGCAAAGGATCAGCTATTGGAGTCGGGC
GTGGCCGTGCGGTTGCAATGCGTGCCCGGGCTGCTGCTGGTCGTGGTGGTGGTCCTGTTGGACGGGGTGGTGCACCTCCG
GTGAGGAGATAGATTGTCTGTCATCTATTATCTGCCTGAGGAAGTTGATGCCTTAATTTGAAAACATTGCTTGAGAATTA
AACAGCCAGTGTGCATCTTGTCTGATCAATCCGCTTAAAGGAGGATGCATGCATGTTGGTGGCGTCGATTTCATGTATTT
TTAATGTTAGATATGGTAGGTTGAGTATGATATTTCAAAGGTAGAAACATTGTGTTCGTTAACCTGATTTGAATGACAAG
ACCAGTTTCCCCTGTCATTGAGCGAATTTCCTTTTGTATCTACCAGTTTAGTGGCCGTTTGGAACGCAGTGATTCTTAAA
ATTCATGTGCTCCAAAGGCCTAGTGGTTATCTGGCAACTTCCTGAATCGGATGCTTCTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis