Browse Element(s) Details


Os.18646.1.S1_at

Description gb:AK069513.1
DB_XREF= gi:32979537
TID=Os.18646.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18646 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020H09, full insert sequence.
FL= gb:AK069513.1 gb:AK104028.1 gb:AK119256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2541011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g25380Os.47907.1.S1_at1/114+14667889..14669379Cytokinin-O-glucosyltransferase 2, putative
LOC_Os04g25390Os.48948.1.S1_x_at10/114+14670867..14679132expressed protein
LOC_Os04g25390OsAffx.26155.1.S1_x_at9/114+14670867..14679132expressed protein
LOC_Os04g25390Os.48948.1.S1_at7/114+14670867..14679132expressed protein
LOC_Os04g25390Os.33708.2.S1_at1/114+14670867..14679132expressed protein
LOC_Os04g25400Os.10613.1.S1_at5/114+14686023..14691710Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus family protein, expressed
LOC_Os04g25410Os.18646.1.S1_at11/114+14693817..14697356pentatricopeptide, putative, expressed
LOC_Os04g25420OsAffx.3893.1.S1_at11/114+14713747..14714228hypothetical protein
LOC_Os04g25430OsAffx.28601.3.S1_x_at10/114+14715768..14716963hypothetical protein
LOC_Os04g25430OsAffx.28601.3.S1_at8/114+14715768..14716963hypothetical protein
LOC_Os04g25440Os.47907.1.S1_at10/114+14717790..14719616UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g25454Os.47463.1.S1_x_at5/114+14722174..14734758transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g25454Os.14491.2.S1_x_at5/114+14722174..14734758transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18646.1.S1_at--823--9511Chr04:14694336..14694360 (25 bp)
TCTCAAGATGGTTCACTGGTGCGCT
LOC_Os04g25410
Os.18646.1.S1_at--929--1951Chr04:14694322..14694346 (25 bp)
ACTGGTGCGCTGATCGTGCAATCAA
LOC_Os04g25410
Os.18646.1.S1_at--1028--9451Chr04:14694274..14694298 (25 bp)
TCTGGGTGCCACCACATGAAGTGAC
LOC_Os04g25410
Os.18646.1.S1_at--361--5431Chr04:14694143..14694167 (25 bp)
GAACCACTGGTTCGCACGTATGCAG
LOC_Os04g25410
Os.18646.1.S1_at--30--6211Chr04:14694093..14694117 (25 bp)
GAGGCACCGCCTTAAGATCGAAAAT
LOC_Os04g25410
Os.18646.1.S1_at--835--4051Chr04:14694057..14694081 (25 bp)
CGAGGAAACCGCCAAGCTGCTTGAT
LOC_Os04g25410
Os.18646.1.S1_at--136--1611Chr04:14694043..14694067 (25 bp)
AGCTGCTTGATTCTGTCTGTATTGA
LOC_Os04g25410
Os.18646.1.S1_at--958--6451Chr04:14694020..14694044 (25 bp)
GATCAATGAACGTGCCTTAGATTTG
LOC_Os04g25410
Os.18646.1.S1_at--896--9871Chr04:14693908..14693932 (25 bp)
TACATTTACTTTTGTTCCTCGGCTG
LOC_Os04g25410
Os.18646.1.S1_at--242--4351Chr04:14693876..14693900 (25 bp)
CCAGTCCCCAGATGCTGAATGGTTG
LOC_Os04g25410
Os.18646.1.S1_at--69--9551Chr04:14693840..14693864 (25 bp)
TCTTTCAGTTCCCATACCTATGGAC
LOC_Os04g25410
Target Sequence 
TCTCAAGATGGTTCACTGGTGCGCTGATCGTGCAATCAAGAAAGGGCACAGCGCTGGTAGGATCTGGGTGCCACCACATG
AAGTGACTGAAACCTTGATGGATTACTTTGAGAAGAACAAAGATGTAGATGGAGCTGAGAAATTTGTCGAGGTATTAAAG
AAGGTACAGAAGGATTTGGGCACGGTGGTGTTTGAACCACTGGTTCGCACGTATGCAGCTGCTGGGAAGAAGCTCCCTGG
GATGAGGCACCGCCTTAAGATCGAAAATGTGGAAGTCAGCGAGGAAACCGCCAAGCTGCTTGATTCTGTCTGTATTGATC
AATGAACGTGCCTTAGATTTGGATTATGTAATAACATCAGGATGCATGCAAATTGACATGGTTCTTCTGCAAAACCTGTA
ATAGTTGCTGTAAGCTGAAATTTAGCACTACATTTACTTTTGTTCCTCGGCTGTTTCGACCCAGTCCCCAGATGCTGAAT
GGTTGGTTTGAAATCTTCTTTCAGTTCCCATACCTATGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis