Browse Element(s) Details


Os.18654.2.S1_at

Description gb:AK059773.1
DB_XREF= gi:32969791
TID=Os.18654.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18654 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-304-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-204-A01, full insert sequence.
FL= gb:AK059773.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3663010/11Eukaryotic-type carbonic anhydrase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36600OsAffx.29562.1.S1_at11/118+22959336..22959707hypothetical protein
LOC_Os08g36610OsAffx.6045.1.S1_s_at11/118+22961207..22961824hypothetical protein
LOC_Os08g36610OsAffx.6045.1.S1_at11/118+22961207..22961824hypothetical protein
LOC_Os08g36610OsAffx.13557.1.S1_x_at1/118+22961207..22961824hypothetical protein
LOC_Os08g36620OsAffx.22848.3.S1_x_at3/118+22969112..22975070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36620OsAffx.22848.4.S1_at2/118+22969112..22975070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36620OsAffx.22848.4.S1_x_at1/118+22969112..22975070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g36630Os.18654.1.S1_x_at11/118+22984187..22986647Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os08g36630Os.18654.2.S1_at10/118+22984187..22986647Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os08g36640OsAffx.29563.1.S1_at11/118+22993581..22993838hypothetical protein
LOC_Os08g36650OsAffx.10905.2.S1_at7/118+22996618..22998928retrotransposon protein, putative, unclassified
LOC_Os08g36660OsAffx.29564.1.S1_at11/118+23000788..23003041expressed protein
LOC_Os08g36670OsAffx.22940.3.S1_at10/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.5.S1_x_at7/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.3.S1_x_at7/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.1.S1_s_at6/118+23004725..23011995hypothetical protein
LOC_Os08g36670Os.35344.3.S1_x_at5/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.2.S1_s_at5/118+23004725..23011995hypothetical protein
LOC_Os08g36670Os.35344.18.S1_x_at3/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.22940.5.S1_at2/118+23004725..23011995hypothetical protein
LOC_Os08g36670OsAffx.31552.2.S1_at1/118+23004725..23011995hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006730biological_processone-carbon compound metabolism
GO:0004089molecular_functioncarbonate dehydratase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18654.2.S1_at--24--9751Chr08:22984302..22984326 (25 bp)
TAATTTCATGCCATGTGTGTAGCAT
LOC_Os08g36630
Os.18654.2.S1_at--280--591Chr08:22984295..22984319 (25 bp)
ATGCCATGTGTGTAGCATGTGTGTT
LOC_Os08g36630
Os.18654.2.S1_at--639--791Chr08:22984290..22984314 (25 bp)
ATGTGTGTAGCATGTGTGTTGATGT
LOC_Os08g36630
Os.18654.2.S1_at--326--6011Chr08:22984264..22984288 (25 bp)
GAGAGATTTGATTATTGTGGCGTAC
LOC_Os08g36630
Os.18654.2.S1_at--1061--10251Chr08:22984258..22984282 (25 bp)
TTTGATTATTGTGGCGTACTAACCG
LOC_Os08g36630
Os.18654.2.S1_at--396--7631Chr08:22984233..22984257 (25 bp)
GGGACACAAACTAAGACCCTTCCAG
LOC_Os08g36630
Os.18654.2.S1_at--822--2391Chr08:22984226..22984250 (25 bp)
AAACTAAGACCCTTCCAGCTGTGCT
LOC_Os08g36630
Os.18654.2.S1_at--979--3731Chr08:22984223..22984247 (25 bp)
CTAAGACCCTTCCAGCTGTGCTGTT
LOC_Os08g36630
Os.18654.2.S1_at--617--3891Chr08:22984208..22984232 (25 bp)
CTGTGCTGTTTGTCTTCTTTGTATA
LOC_Os08g36630
Os.18654.2.S1_at--505--7311Chr08:22984206..22984230 (25 bp)
GTGCTGTTTGTCTTCTTTGTATAAA
LOC_Os08g36630
Os.18654.2.S1_at--187--6851NONE
GTTTGTCTTCTTTGTATAAACCAAG
NONE
Target Sequence 
TAATTTCATGCCATGTGTGTAGCATGTGTGTTGATGTGGAGAGATTTGATTATTGTGGCGTACTAACCGGGGACACAAAC
TAAGACCCTTCCAGCTGTGCTGTTTGTCTTCTTTGTATAAACCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18654.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis