Browse Element(s) Details


Os.18672.1.S1_s_at

Description gb:AU031600
DB_XREF= gi:3767490
DB_XREF=AU031600
CLONE=E61930_2Z
TID=Os.18672.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.18672 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_175036.1 (A.thaliana) histidine decarboxylase, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g337106/11Histidine decarboxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g33690OsAffx.24558.1.S1_at11/112+20084348..20084722hypothetical protein
LOC_Os02g33700OsAffx.12337.1.S1_at10/112+20096900..20098594hypothetical protein
LOC_Os02g33700Os.55134.1.S1_at3/112+20096900..20098594hypothetical protein
LOC_Os02g33700Os.55296.1.S1_x_at2/112+20096900..20098594hypothetical protein
LOC_Os02g33710Os.18672.1.S1_s_at6/112+20103243..20106357Histidine decarboxylase, putative, expressed
LOC_Os02g33720OsAffx.24559.1.S1_x_at11/112+20112353..20112961Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g33730OsAffx.24560.1.S1_s_at10/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_at3/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_at2/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.28660.1.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33730OsAffx.12861.4.S1_x_at1/112+20119391..20124366Ubiquinol-cytochrome C reductase hinge protein, expressed
LOC_Os02g33740Os.31602.1.S1_at11/112+20125938..20127025expressed protein
LOC_Os02g33740OsAffx.2847.1.S1_at11/112+20125938..20127025expressed protein
LOC_Os02g33750Os.50564.1.A1_s_at11/112+20129645..20134860transposon protein, putative, unclassified, expressed
LOC_Os02g33750Os.50564.2.S1_at10/112+20129645..20134860transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006520biological_processamino acid metabolism
GO:0016831molecular_functioncarboxy-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18672.1.S1_s_at--683--6191Chr02:20106045..20106069 (25 bp)
GAGGAACGCTCACTACCTGAAGGAC
LOC_Os02g33710
Os.18672.1.S1_s_at--250--5091Chr02:20106116..20106140 (25 bp)
GCACCGTGGTGTTCGAAAGGCCCAA
LOC_Os02g33710
Os.18672.1.S1_s_at--1120--1071Chr02:20106179..20106203 (25 bp)
AGGGCAACATCGCTCATGTCGTGGT
LOC_Os02g33710
Os.18672.1.S1_s_at--800--8851Chr02:20106203..20106227 (25 bp)
TGATGCCCAGTGTGACCATCGACAA
LOC_Os02g33710
Os.18672.1.S1_s_at--240--7851Chr02:20106272..20106296 (25 bp)
GGTACCAGGACGGATCATGCCAGCC
LOC_Os02g33710
Os.18672.1.S1_s_at--289--4471Chr02:20106332..20106356 (25 bp)
GCCTCTGCAGCATCCACAAGAAGTG
LOC_Os02g33710
Os.18672.1.S1_s_at--198--2231Chr02:20106378..20106402 (25 bp)
ACAAGGAGCCATGTTGCAGTGTAGC
NONE
Os.18672.1.S1_s_at--40--6971Chr02:20106398..20106422 (25 bp)
GTAGCTTTGTGTTGTTGTCGTGGCC
NONE
Os.18672.1.S1_s_at--811--7191Chr02:20106414..20106438 (25 bp)
GTCGTGGCCTGAAGTTAGTACTCCT
NONE
Os.18672.1.S1_s_at--1046--9751Chr02:20106438..20106462 (25 bp)
TAATGCGTTGTGTTGTACCCCGATG
NONE
Os.18672.1.S1_s_at--71--4211Chr02:20106455..20106479 (25 bp)
CCCCGATGCCTTCTGTATGTAATAA
NONE
Target Sequence 
GAGGAACGCTCACTACCTGAAGGACCGCCTCAAGGAAGCTGGAATCGGCGCCATGCTCAACGAGCTGAGCAGCACCGTGG
TGTTCGAAAGGCCCAAGGACGAGGAGTTCGTCCGGAGGTGGCAGCTCGCCTGCGAGGGCAACATCGCTCATGTCGTGGTG
ATGCCCAGTGTGACCATCGACAAGCTGGACTACTTCCTGAACGAGCTGACGGAGAAGCGGGCGACCTGGTACCAGGACGG
ATCATGCCAGCCTCCCTGCCTCGCCAAAGACGTAGGCGAGGAGAACTGCCTCTGCAGCATCCACAAGAAGTGAAGAGGAG
CTTATATATTATAACAAGGAGCCATGTTGCAGTGTAGCTTTGTGTTGTTGTCGTGGCCTGAAGTTAGTACTCCTAATGCG
TTGTGTTGTACCCCGATGCCTTCTGTATGTAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18672.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis