Browse Element(s) Details


Os.18851.1.A1_at

Description gb:AK105620.1
DB_XREF= gi:32990829
TID=Os.18851.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0016M10.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C05, full insert sequence.
FL= gb:AK105620.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0573010/11Armadillo/beta-catenin-like repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05700OsAffx.8864.1.S1_at11/1110+2858350..2858901retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g05710Os.46273.1.S1_at11/1110+2860114..2866525retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g05730Os.18851.2.A1_at11/1110+2869442..2873929Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g05730Os.18851.1.A1_at10/1110+2869442..2873929Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g05720OsAffx.30305.1.S1_at11/1110+2869612..2870662Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g05740OsAffx.6586.1.S1_at11/1110+2878546..2880179hypothetical protein
LOC_Os10g05750Os.8203.1.S1_at11/1110+2881765..2883207proline-rich protein, putative, expressed
LOC_Os10g05770OsAffx.20747.1.S1_at10/1110+2889282..2892519hypothetical protein
LOC_Os10g05770OsAffx.14013.2.S1_at2/1110+2889282..2892519hypothetical protein
LOC_Os10g05780Os.46723.1.S1_at7/1110+2896902..2898861POT family protein, expressed
LOC_Os10g05780OsAffx.29868.1.S1_at1/1110+2896902..2898861POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18851.1.A1_at--786--6791Chr10:2870012..2870036 (25 bp)
GTTATTGTCAGTTCTTACCCAGGTG
LOC_Os10g05730
Os.18851.1.A1_at--770--9951Chr10:2869997..2870021 (25 bp)
TACCCAGGTGATCAGTGTGGCCAAT
LOC_Os10g05730
Os.18851.1.A1_at--1033--6351Chr10:2869932..2869956 (25 bp)
GATGCCACACTGCTTGGTGACATAG
LOC_Os10g05730
Os.18851.1.A1_at--827--571Chr10:2869899..2869923 (25 bp)
ATCCATGTTGATGTTGTCCCTGACG
LOC_Os10g05730
Os.18851.1.A1_at--473--2071Chr10:2869771..2869795 (25 bp)
ACTTGTAGCAGGTTGTCTTCAGCAC
LOC_Os10g05730
Os.18851.1.A1_at--111--9371Chr10:2869745..2869769 (25 bp)
TCGACATCGTTCTGGCATTCTGTAC
LOC_Os10g05730
Os.18851.1.A1_at--284--5691Chr10:2869655..2869679 (25 bp)
GACTTGAGCTGAGACATCCTGGTAT
LOC_Os10g05730
Os.18851.1.A1_at--86--1371Chr10:2869553..2869577 (25 bp)
AGAGCTTTTGGTGCCTGAGGTTGTC
LOC_Os10g05730
Os.18851.1.A1_at--373--1011Chr10:2869536..2869560 (25 bp)
AGGTTGTCATGCTCCATTCTTGCTT
LOC_Os10g05730
Os.18851.1.A1_at--162--7591Chr10:2869511..2869535 (25 bp)
GGGCTAGTTGAGCATTTCGTCCTGC
LOC_Os10g05730
Os.18851.1.A1_at--963--10611NONE
TTCGTCCTGCGCTGGTAACCATAGA
NONE
Target Sequence 
GTTATTGTCAGTTCTTACCCAGGTGATCAGTGTGGCCAATCAAGTGAAGCCTGCTCACCTCCGCAGTTCCCGGGNATGGC
GATGCCACACTGCTTGGTGACATAGAACACCTTATCCATGTTGATGTTGTCCCTGACGCCTGGGCTGCCCAGGTAGGTGC
AGACGCAGGGCACGTTGACGCCCTTCATGGAGGTGCAGCAGTCAGGTGATGGCTGCAGCTTCGGCCCGTCCTTCTCAACG
AACTTGTAGCAGGTTGTCTTCAGCACCTCGACATCGTTCTGGCATTCTGTACCTGCCGCTGCTGCTGCAGTGGTGAACAC
TGCCAGGAGGAAGATCAGCAGTGCAGCCAGGCTAGAAGACTTGAGCTGAGACATCCTGGTATGTGTTGTTCTTTCTGATA
TCTTGAACTTCTCTGATTAAAACTTGGAAACTTTTGATTTGTGCAATGCAAATATTTATAGAGCTTTTGGTGCCTGAGGT
TGTCATGCTCCATTCTTGCTTGGGCTAGTTGAGCATTTCGTCCTGCGCTGGTAACCATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18851.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis