Browse Element(s) Details


Os.18861.1.S1_a_at

Description gb:AK121387.1
DB_XREF= gi:37991010
TID=Os.18861.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18861 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023127P05, full insert sequence.
FL= gb:AK121387.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3591011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35860OsAffx.27956.1.S1_at11/116+20923539..20926121hypothetical protein
LOC_Os06g35860Os.56283.1.S1_at1/116+20923539..20926121hypothetical protein
LOC_Os06g35870OsAffx.15760.1.S1_at11/116+20928243..20930165D-mannose binding lectin family protein
LOC_Os06g35880OsAffx.15761.1.S1_at10/116+20930635..20933472hypothetical protein
LOC_Os06g35890NANA6+20938338..20938692hypothetical protein
LOC_Os06g35900Os.54005.1.S1_at11/116+20940123..20943080BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os06g35900OsAffx.24237.1.S1_x_at11/116+20940123..20943080BES1/BZR1 homolog protein 4, putative, expressed
LOC_Os06g35910Os.18861.1.S1_a_at11/116+20945147..20951719zinc finger family protein, putative, expressed
LOC_Os06g35910OsAffx.27957.1.S1_at11/116+20945147..20951719zinc finger family protein, putative, expressed
LOC_Os06g35920OsAffx.15763.1.S1_at10/116+20952443..20953274hypothetical protein
LOC_Os06g35930OsAffx.15764.1.S1_at9/116+20959709..20960822MIP family channel proteins containing protein
LOC_Os06g35940OsAffx.15765.1.S1_at10/116+20970972..20973161FLOWERING LOCUS T protein, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18861.1.S1_a_at--822--8511Chr06:20948204..20948228 (25 bp)
TGGAAATGCACACCTGTCAGTTGGG
LOC_Os06g35910
Os.18861.1.S1_a_at--735--151Chr06:20948173..20948197 (25 bp)
ATTAGTGCTTCTGCTGGTCATCTTG
LOC_Os06g35910
Os.18861.1.S1_a_at--763--3431Chr06:20948139..20948163 (25 bp)
CAGAGGCTGATTTCCGTGCTGGTGA
LOC_Os06g35910
Os.18861.1.S1_a_at--652--8811Chr06:20945533..20945557 (25 bp)
TGTTGTATCAACTCGACATTCGGCG
LOC_Os06g35910
Os.18861.1.S1_a_at--1031--2271Chr06:20945471..20945495 (25 bp)
AAATCCTTCTTGGTTCAGTGAGCAG
LOC_Os06g35910
Os.18861.1.S1_a_at--260--5311Chr06:20945398..20945422 (25 bp)
GAAGGTCGAAAATTACTCCTCTCCT
LOC_Os06g35910
Os.18861.1.S1_a_at--512--2191Chr06:20945362..20945386 (25 bp)
ACACACATTGTGTCCCCTGGTGATT
LOC_Os06g35910
Os.18861.1.S1_a_at--510--7051Chr06:20945329..20945353 (25 bp)
GTAACTCTAGGTATTGCTTTGTGCT
LOC_Os06g35910
Os.18861.1.S1_a_at--798--1991Chr06:20945296..20945320 (25 bp)
ACTCCTGGGTGGGTGATTTATCAAC
LOC_Os06g35910
Os.18861.1.S1_a_at--512--8751Chr06:20945271..20945295 (25 bp)
TGTACAGTTTGCCATTCGTTGCCAT
LOC_Os06g35910
Os.18861.1.S1_a_at--1051--2251Chr06:20945245..20945269 (25 bp)
AAATAGATCATCTCTCCAGTGCCAC
LOC_Os06g35910
Target Sequence 
TGGAAATGCACACCTGTCAGTTGGGGCTGGCATTAGTGCTTCTGCTGGTCATCTTGGGCGAGTGGCAGAGGCTGATTTCC
GTGCTGGTGATGGTGGTTATGCAGCCTGTTACACATACAGTTGCAGCAAAGGGGCATTTGTGGGCTGTGCACTCAATGGA
AGTGTTGTATCAACTCGACATTCGGCGAATGCCCAATTTTATGGTGGTCCAATAAAGGCATCAGAAATCCTTCTTGGTTC
AGTGAGCAGGCCAGCTGCTGCCGCTACCCTCTACAGAGCTCTGTCCAAATTGTTTGAGAAGGTCGAAAATTACTCCTCTC
CTCTAGATTTCTGACACACATTGTGTCCCCTGGTGATTACCCAGTGGTAACTCTAGGTATTGCTTTGTGCTCTCTGCTTA
CTCCTGGGTGGGTGATTTATCAACTGTACAGTTTGCCATTCGTTGCCATCAAATAGATCATCTCTCCAGTGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18861.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis