Browse Element(s) Details


Os.1924.1.S1_at

Description gb:C98566
DB_XREF= gi:3761318
DB_XREF=C98566
CLONE=E0414_6Z
TID=Os.1924.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.1924 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0702B09.15 (P0702B09.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g165302/11transposon protein, putative, unclassified
LOC_Os03g366841/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g461101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16480Os.14911.1.S1_at11/118+10088535..10098829ATPase, AFG1 family protein, expressed
LOC_Os08g16480Os.47481.1.S1_at1/118+10088535..10098829ATPase, AFG1 family protein, expressed
LOC_Os08g16490OsAffx.29234.1.S1_x_at11/118+10101933..10102841hypothetical protein
LOC_Os08g16490OsAffx.29234.1.S1_at11/118+10101933..10102841hypothetical protein
LOC_Os08g16490OsAffx.5018.1.S1_at1/118+10101933..10102841hypothetical protein
LOC_Os08g16490OsAffx.12942.2.S1_at1/118+10101933..10102841hypothetical protein
LOC_Os08g16500NANA8+10103422..10104715hypothetical protein
LOC_Os08g16510OsAffx.31869.1.S1_at8/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.5.S1_x_at5/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.3.S1_s_at3/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.3.S1_x_at3/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.2.S1_at1/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.4.S1_x_at1/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16520OsAffx.7527.1.S1_x_at1/118+10111005..10112326hypothetical protein
LOC_Os08g16530Os.1924.1.S1_at2/118+10113176..10117227transposon protein, putative, unclassified
LOC_Os08g16530OsAffx.10632.1.S1_at1/118+10113176..10117227transposon protein, putative, unclassified
LOC_Os08g16540NANA8+10117480..10120552retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g16550OsAffx.16318.1.S1_x_at1/118+10120725..10121714hypothetical protein
LOC_Os08g16570OsAffx.17026.1.S1_at11/118+10132247..10135382expressed protein
LOC_Os08g16570Os.48405.1.A1_at8/118+10132247..10135382expressed protein
LOC_Os08g16580OsAffx.29237.1.S1_at11/118+10136050..10138356Leucine Rich Repeat family protein, expressed
LOC_Os08g16590OsAffx.29238.1.S1_at10/118+10141571..10143433hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1924.1.S1_at--756--4139Chr10:15158266..15158287 (22 bp)
CCACCACCACTAGGGATGAAAACGG
NONE
Os.1924.1.S1_at--466--8592Chr02:31695190..31695209 (20 bp)
TGGTCGGAAACTAACTTTATCATAT
NONE
Os.1924.1.S1_at--567--9697Chr09:8781018..8781042 (25 bp)
TAATCGGAACATAAAAGCCCCTCAA
NONE
Os.1924.1.S1_at--716--2533Chr12:14629463..14629937 (25 bp)
AACTGACCTTCACAAATCAGCGAAG
NONE
Os.1924.1.S1_at--1073--5951Chr01:34588241..34588265 (25 bp)
GAGAAACATCTACAAACTTGCACAT
NONE
Os.1924.1.S1_at--1081--8712Chr03:20300842..20300866 (25 bp)
TGTCACACACATTACCGGTTACAAA
LOC_Os03g36684
Os.1924.1.S1_at--530--9971Chr01:34588188..34588212 (25 bp)
TACCGGTTACAAACTTGCACATGAT
NONE
Os.1924.1.S1_at--1056--5111Chr01:34588172..34588196 (25 bp)
GCACATGATGGCAGTTACAGGCATT
NONE
Os.1924.1.S1_at--310--3312Chr12:9868105..9868125 (21 bp)
CACATAGGGATAATTTCGTTCTTAC
NONE
Os.1924.1.S1_at--621--6731Chr01:34588128..34588152 (25 bp)
GTTCTTACCCTTATTTCGATATGCA
NONE
Os.1924.1.S1_at--195--7411Chr01:34588100..34588124 (25 bp)
GTGATTTTGCCCCTACTTTATAGGG
NONE
Target Sequence 
CCACCACCACTAGGGATGAAAACGGATCGAATATGGTCGGAAACTAACTTTATCATATTCNGTTTTCATATTTTTTCTTA
GAATCGAAATCGGAATAGAAAACCCGGATACAAAAACGGANTCGAATATTATCAAATACAGATACGGAGCGAATACGAAT
CGAAACAAATACGGTAACAAATATTAATCGGAACATAAAAGCCCCTCAAACTGACCTTCACAAATCAGCGAAGAAATATA
ACTTGTTTTTTATAATAGAATGTGTTACAATTCCAAAAGATCAACGATTAATAATACCATAACGAGAAACATCTACAAAC
TTGCACATACTGACAAAGTCACACTGTCACACACATTACCGGTTACAAACTTGCACATGATGGCAGTTACAGGCATTAAC
ACATAGGGATAATTTCGTTCTTACCCTTATTTCGATATGCAATTGTGATTTTGCCCCTACTTTATAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis