Browse Element(s) Details


Os.48405.1.A1_at

Description gb:CR282381
DB_XREF= gi:44668947
DB_XREF=CR282381
CLONE=p828e02p3
TID=Os.48405.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.48405 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_563991.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g165708/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16510OsAffx.31869.1.S1_at8/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.5.S1_x_at5/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.3.S1_s_at3/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.3.S1_x_at3/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.2.S1_at1/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16510OsAffx.31869.4.S1_x_at1/118+10108515..10109630retrotransposon protein, putative, unclassified
LOC_Os08g16520OsAffx.7527.1.S1_x_at1/118+10111005..10112326hypothetical protein
LOC_Os08g16530Os.1924.1.S1_at2/118+10113176..10117227transposon protein, putative, unclassified
LOC_Os08g16530OsAffx.10632.1.S1_at1/118+10113176..10117227transposon protein, putative, unclassified
LOC_Os08g16540NANA8+10117480..10120552retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g16550OsAffx.16318.1.S1_x_at1/118+10120725..10121714hypothetical protein
LOC_Os08g16570OsAffx.17026.1.S1_at11/118+10132247..10135382expressed protein
LOC_Os08g16570Os.48405.1.A1_at8/118+10132247..10135382expressed protein
LOC_Os08g16580OsAffx.29237.1.S1_at11/118+10136050..10138356Leucine Rich Repeat family protein, expressed
LOC_Os08g16590OsAffx.29238.1.S1_at10/118+10141571..10143433hypothetical protein
LOC_Os08g16600Os.47927.1.S1_at11/118+10145728..10150415WD-40 repeat protein family, putative, expressed
LOC_Os08g16610Os.9431.1.A1_a_at11/118+10153890..10159336N terminus of Rad21/Rec8 like protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48405.1.A1_at--973--8191Chr08:10135013..10135037 (25 bp)
GGAATGGATGGTTTTACTCTCTCAC
LOC_Os08g16570
Os.48405.1.A1_at--681--6751Chr08:10135023..10135047 (25 bp)
GTTTTACTCTCTCACCGAAAAGGCG
LOC_Os08g16570
Os.48405.1.A1_at--424--8471Chr08:10135090..10135114 (25 bp)
TGGCTCAAGGAGATTAAGGTCATAT
LOC_Os08g16570
Os.48405.1.A1_at--868--3411Chr08:10135131..10135155 (25 bp)
CAGAAGATGTGTGGTTTCGAGTCAT
LOC_Os08g16570
Os.48405.1.A1_at--785--9371Chr08:10135147..10135171 (25 bp)
TCGAGTCATGTTGATGTTATCCATA
LOC_Os08g16570
Os.48405.1.A1_at--1122--8731NONE
TGATAAACTACTTTAGGTGCCTGTT
NONE
Os.48405.1.A1_at--234--6531Chr08:10135217..10135241 (25 bp)
GATTTGAGTTTAGTTAGCCTGTTAT
LOC_Os08g16570
Os.48405.1.A1_at--811--10211NONE
TATTAGTAATTTCCATGTCACCTGT
NONE
Os.48405.1.A1_at--495--1771Chr08:10135260..10135284 (25 bp)
ACCTGTGTCACAATAAACCTTTCTA
LOC_Os08g16570
Os.48405.1.A1_at--975--6091Chr08:10135296..10135320 (25 bp)
GAGTGCTCAAGCTGGTCGTTATAAA
LOC_Os08g16570
Os.48405.1.A1_at--665--631NONE
ATGCTCAAAGTTCGTGATAGGCACC
NONE
Target Sequence 
GGAATGGATGGTTTTACTCTCTCACCGAAAAGGCGCTNGCACAAGGAAAGCCGGATCCATGCCCANTCCACNCAGCTTGG
CTCAAGGAGATTAAGGTCATATAAAGAACTTTTATGTACAGAAGATGTGTGGTTTCGAGTCATGTTGATGTTATCCATAT
AGAGAAAATCGCATAATCTGATAAACTACTTTAGGTGCCTGTTTGATTTGAGTTTAGTTAGCCTGTTATATTAGTAATTT
CCATGTCACCTGTGTCACAATAAACCTTTCTATGTGAAAAATTGAGTGCTCAAGCTGGTCGTTATAAACTTATAATGCTC
AAAGTTCGTGATAGGCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48405.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis