Browse Element(s) Details


OsAffx.29238.1.S1_at

Description tigr:9636.m01666
TID=OsAffx.29238.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1659010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16530Os.1924.1.S1_at2/118+10113176..10117227transposon protein, putative, unclassified
LOC_Os08g16530OsAffx.10632.1.S1_at1/118+10113176..10117227transposon protein, putative, unclassified
LOC_Os08g16540NANA8+10117480..10120552retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g16550OsAffx.16318.1.S1_x_at1/118+10120725..10121714hypothetical protein
LOC_Os08g16570OsAffx.17026.1.S1_at11/118+10132247..10135382expressed protein
LOC_Os08g16570Os.48405.1.A1_at8/118+10132247..10135382expressed protein
LOC_Os08g16580OsAffx.29237.1.S1_at11/118+10136050..10138356Leucine Rich Repeat family protein, expressed
LOC_Os08g16590OsAffx.29238.1.S1_at10/118+10141571..10143433hypothetical protein
LOC_Os08g16600Os.47927.1.S1_at11/118+10145728..10150415WD-40 repeat protein family, putative, expressed
LOC_Os08g16610Os.9431.1.A1_a_at11/118+10153890..10159336N terminus of Rad21/Rec8 like protein, expressed
LOC_Os08g16620OsAffx.17027.1.S1_at11/118+10162020..10163102hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29238.1.S1_at--413--3471Chr08:10141913..10141936 (24 bp)
CAGGTGATGGTATTGATATTTTGCC
LOC_Os08g16590
OsAffx.29238.1.S1_at--34--10211Chr08:10141897..10141921 (25 bp)
TATTTTGCCACTTTCGTTCCTTTCT
LOC_Os08g16590
OsAffx.29238.1.S1_at--780--9191Chr08:10141892..10141916 (25 bp)
TGCCACTTTCGTTCCTTTCTAAATT
LOC_Os08g16590
OsAffx.29238.1.S1_at--468--9391Chr08:10141884..10141908 (25 bp)
TCGTTCCTTTCTAAATTAGGCCAGA
LOC_Os08g16590
OsAffx.29238.1.S1_at--390--10431Chr08:10141869..10141893 (25 bp)
TTAGGCCAGAAGGAGAGTGAATTAA
LOC_Os08g16590
OsAffx.29238.1.S1_at--182--3731Chr08:10141838..10141862 (25 bp)
CTAACATGGAGTGTAATGGTTTTTT
LOC_Os08g16590
OsAffx.29238.1.S1_at--133--10391Chr08:10141817..10141841 (25 bp)
TTTTGGGAGAGTTGGCTGAGGCTAA
LOC_Os08g16590
OsAffx.29238.1.S1_at--98--3871NONE
CTGAGGCTAAGTTGGATGTCGATGT
NONE
OsAffx.29238.1.S1_at--1040--3731Chr08:10141626..10141647 (22 bp)
CTAAGTTGGATGTCGATGTGGAGAT
LOC_Os08g16590
OsAffx.29238.1.S1_at--1043--811Chr08:10141603..10141627 (25 bp)
ATGGTTGAGGCCGACAAATCATCTT
LOC_Os08g16590
OsAffx.29238.1.S1_at--408--7911Chr08:10141601..10141625 (25 bp)
GGTTGAGGCCGACAAATCATCTTGC
LOC_Os08g16590
Target Sequence 
CAGGTGATGGTATTGATATTTTGCCACTTTCGTTCCTTTCTAAATTAGGCCAGAAGGAGAGTGAATTAATGGAAACTAAC
ATGGAGTGTAATGGTTTTTTGGGAGAGTTGGCTGAGGCTAAGTTGGATGTCGATGTGGAGATGGTTGAGGCCGACAAATC
ATCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29238.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis