Browse Element(s) Details


Os.9431.1.A1_a_at

Description gb:AF314166.1
DB_XREF= gi:12407951
TID=Os.9431.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9431 (NCBI UniGene Cluster)
DEF=Oryza sativa RIX4 mRNA, complete cds.
PROD=RIX4
FL= gb:AF314166.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1661011/11N terminus of Rad21/Rec8 like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16570OsAffx.17026.1.S1_at11/118+10132247..10135382expressed protein
LOC_Os08g16570Os.48405.1.A1_at8/118+10132247..10135382expressed protein
LOC_Os08g16580OsAffx.29237.1.S1_at11/118+10136050..10138356Leucine Rich Repeat family protein, expressed
LOC_Os08g16590OsAffx.29238.1.S1_at10/118+10141571..10143433hypothetical protein
LOC_Os08g16600Os.47927.1.S1_at11/118+10145728..10150415WD-40 repeat protein family, putative, expressed
LOC_Os08g16610Os.9431.1.A1_a_at11/118+10153890..10159336N terminus of Rad21/Rec8 like protein, expressed
LOC_Os08g16620OsAffx.17027.1.S1_at11/118+10162020..10163102hypothetical protein
LOC_Os08g16630OsAffx.17028.1.S1_at10/118+10171942..10173452F-box domain containing protein
LOC_Os08g16640OsAffx.5843.1.S1_at11/118+10174556..10174951hypothetical protein
LOC_Os08g16650OsAffx.17029.1.S1_at11/118+10181751..10183076hypothetical protein
LOC_Os08g16660Os.7891.2.S1_at10/118+10183796..10186859Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007062biological_processsister chromatid cohesion
GO:0007067biological_processmitosis
GO:0010032biological_processmeiotic chromosome condensation
GO:0000798cellular_componentnuclear cohesin complex
GO:0005634cellular_componentnucleus
GO:0008278cellular_componentcohesin complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9431.1.A1_a_at--331--2691Chr08:10158597..10158621 (25 bp)
AAGCTGCACGCATGTTTTTTGAAAC
LOC_Os08g16610
Os.9431.1.A1_a_at--565--5031Chr08:10158782..10158806 (25 bp)
GCAGTTTCAGTTAAACCCTCACTCT
LOC_Os08g16610
Os.9431.1.A1_a_at--664--2951Chr08:10158896..10158920 (25 bp)
AATGGCCTGAACAATGGATTCTTAT
LOC_Os08g16610
Os.9431.1.A1_a_at--29--5671Chr08:10158925..10158949 (25 bp)
GACATGGCTGGCTAATCTACTGCAA
LOC_Os08g16610
Os.9431.1.A1_a_at--874--9911Chr08:10158942..10158966 (25 bp)
TACTGCAATTTGCTGGACTCCAATT
LOC_Os08g16610
Os.9431.1.A1_a_at--880--4711Chr08:10158953..10158977 (25 bp)
GCTGGACTCCAATTACTAGAACAAG
LOC_Os08g16610
Os.9431.1.A1_a_at--401--6931Chr08:10158977..10159001 (25 bp)
GTAGGCACTCCATGCCATTTAGGTT
LOC_Os08g16610
Os.9431.1.A1_a_at--47--6971Chr08:10159032..10159056 (25 bp)
GTAGCATTAGTAGTTGTCGAAAGCC
LOC_Os08g16610
Os.9431.1.A1_a_at--1004--5551Chr08:10159050..10159074 (25 bp)
GAAAGCCAATACATCTTGTCCAGTT
LOC_Os08g16610
Os.9431.1.A1_a_at--697--2051Chr08:10159078..10159102 (25 bp)
ACTTCAGATGGTAGTCCTTGCCTAT
LOC_Os08g16610
Os.9431.1.A1_a_at--611--4311Chr08:10159093..10159117 (25 bp)
CCTTGCCTATGCTTTCTTGGCAGAA
LOC_Os08g16610
Target Sequence 
AAGCTGCACGCATGTTTTTTGAAACACTGGTTCTAAAGAGTTATGATTATATTGATGTTGAACAAGAAGCAGCCTATGGT
GATATAGCAGTTTCAGTTAAACCCTCACTCTCAGGGGCCCAATTCCAGTGCTTAGACCCACATATAATCTCATTTGATCC
GCGGGAAGGAGCTTTGGTGGGATTTGCAGAAATGGCCTGAACAATGGATTCTTATATGCGACATGGCTGGCTAATCTACT
GCAATTTGCTGGACTCCAATTACTAGAACAAGTAGGCACTCCATGCCATTTAGGTTTATGTTGCAGAATACTGTAGTTGT
AAAGCTGTAGCATTAGTAGTTGTCGAAAGCCAATACATCTTGTCCAGTTAGGACTTCAGATGGTAGTCCTTGCCTATGCT
TTCTTGGCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9431.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis