Browse Element(s) Details


OsAffx.17027.1.S1_at

Description tigr:9636.m01670
TID=OsAffx.17027.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1662011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16580OsAffx.29237.1.S1_at11/118+10136050..10138356Leucine Rich Repeat family protein, expressed
LOC_Os08g16590OsAffx.29238.1.S1_at10/118+10141571..10143433hypothetical protein
LOC_Os08g16600Os.47927.1.S1_at11/118+10145728..10150415WD-40 repeat protein family, putative, expressed
LOC_Os08g16610Os.9431.1.A1_a_at11/118+10153890..10159336N terminus of Rad21/Rec8 like protein, expressed
LOC_Os08g16620OsAffx.17027.1.S1_at11/118+10162020..10163102hypothetical protein
LOC_Os08g16630OsAffx.17028.1.S1_at10/118+10171942..10173452F-box domain containing protein
LOC_Os08g16640OsAffx.5843.1.S1_at11/118+10174556..10174951hypothetical protein
LOC_Os08g16650OsAffx.17029.1.S1_at11/118+10181751..10183076hypothetical protein
LOC_Os08g16660Os.7891.2.S1_at10/118+10183796..10186859Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17027.1.S1_at--860--1031Chr08:10162095..10162119 (25 bp)
AGGTGCTTACCTGCCATCGAAGAGA
LOC_Os08g16620
OsAffx.17027.1.S1_at--552--671Chr08:10162171..10162195 (25 bp)
ATGACTTGGGCTTCCGGAAACGACG
LOC_Os08g16620
OsAffx.17027.1.S1_at--166--8971Chr08:10162231..10162255 (25 bp)
TGAAACTCAACCTCGTAGTAGCAGA
LOC_Os08g16620
OsAffx.17027.1.S1_at--550--5591Chr08:10162266..10162290 (25 bp)
GAAATAGCGTCTCGACCTGTGCAAA
LOC_Os08g16620
OsAffx.17027.1.S1_at--893--7771Chr08:10162338..10162362 (25 bp)
GGTGCATGTGCTTACTGCGACAGAG
LOC_Os08g16620
OsAffx.17027.1.S1_at--853--1871Chr08:10162373..10162397 (25 bp)
ACGATGGTCGCGCAATGGTGCTTTA
LOC_Os08g16620
OsAffx.17027.1.S1_at--913--711Chr08:10162387..10162411 (25 bp)
ATGGTGCTTTAATGTCCCAAGACGA
LOC_Os08g16620
OsAffx.17027.1.S1_at--194--6231Chr08:10162880..10162904 (25 bp)
GATGGCTCGAGCTCTTGGACATAGT
LOC_Os08g16620
OsAffx.17027.1.S1_at--1149--6111Chr08:10162906..10162930 (25 bp)
GAGGTGGCACTCTCAACAAGGTTGC
LOC_Os08g16620
OsAffx.17027.1.S1_at--532--5511Chr08:10162935..10162959 (25 bp)
GAAAATGATGATCGGCCTGTGCCCT
LOC_Os08g16620
OsAffx.17027.1.S1_at--450--3791Chr08:10163011..10163035 (25 bp)
CTCGTGCTCTCCAAGCGATGATGAG
LOC_Os08g16620
Target Sequence 
AGGTGCTTACCTGCCATCGAAGAGAAGAGGAAGCAACAATGTTCTGGCAACGAGCAGGAAGGAAAAGAAGGCAGGAATGA
CTTGGGCTTCCGGAAACGACGACGGTGCTGGAAACAGGACGACCATGACATGGCGATGAAACTCAACCTCGTAGTAGCAG
AGCAGCAGTGGGAAATAGCGTCTCGACCTGTGCAAACACCAAATGGTGAACAAGGAGGAGGAAATAATGAAGAACTAGAA
TGTGGTGCATGTGCTTACTGCGACAGAGGAGTGGTGGCACGATGGTCGCGCAATGGTGCTTTAATGTCCCAAGACGACGA
TGGGACTGGAAATGGAATGGCAGTGGGTGAAGCTCCTATGGATGGCGAGATGGCTCGAGCTCTTGGACATAGTAGAGGTG
GCACTCTCAACAAGGTTGCAGGAGAAAATGATGATCGGCCTGTGCCCTCTCAGGCTGCGACGGCGGTGCTGGCTCAATCT
CCACTCTCCAGGGTAGCGCCTCGTGCTCTCCAAGCGATGATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17027.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis