Browse Element(s) Details


Os.47927.1.S1_at

Description gb:AK099812.1
DB_XREF= gi:32985021
TID=Os.47927.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099F18, full insert sequence.
FL= gb:AK099812.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1660011/11WD-40 repeat protein family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16550OsAffx.16318.1.S1_x_at1/118+10120725..10121714hypothetical protein
LOC_Os08g16570OsAffx.17026.1.S1_at11/118+10132247..10135382expressed protein
LOC_Os08g16570Os.48405.1.A1_at8/118+10132247..10135382expressed protein
LOC_Os08g16580OsAffx.29237.1.S1_at11/118+10136050..10138356Leucine Rich Repeat family protein, expressed
LOC_Os08g16590OsAffx.29238.1.S1_at10/118+10141571..10143433hypothetical protein
LOC_Os08g16600Os.47927.1.S1_at11/118+10145728..10150415WD-40 repeat protein family, putative, expressed
LOC_Os08g16610Os.9431.1.A1_a_at11/118+10153890..10159336N terminus of Rad21/Rec8 like protein, expressed
LOC_Os08g16620OsAffx.17027.1.S1_at11/118+10162020..10163102hypothetical protein
LOC_Os08g16630OsAffx.17028.1.S1_at10/118+10171942..10173452F-box domain containing protein
LOC_Os08g16640OsAffx.5843.1.S1_at11/118+10174556..10174951hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47927.1.S1_at--645--9111Chr08:10149758..10149782 (25 bp)
TGCGCTATCAACTCCTTTGACATAG
LOC_Os08g16600
Os.47927.1.S1_at--1006--5671Chr08:10149776..10149800 (25 bp)
GACATAGATCCTGAGAACCCTTCTG
LOC_Os08g16600
Os.47927.1.S1_at--667--2251Chr08:10149974..10149998 (25 bp)
AAATTTCCTGCATGGTCTTCCTTAA
LOC_Os08g16600
Os.47927.1.S1_at--738--3171Chr08:10150085..10150109 (25 bp)
AATTGTCTTGCGACTTTGGGTCGTT
LOC_Os08g16600
Os.47927.1.S1_at--828--10611Chr08:10150112..10150136 (25 bp)
TTCGTTGCCTTGTCGGTGTAATTGA
LOC_Os08g16600
Os.47927.1.S1_at--1159--6531Chr08:10150161..10150185 (25 bp)
GATTATCGTTCCTAGTTTCCTACAT
LOC_Os08g16600
Os.47927.1.S1_at--978--2091Chr08:10150182..10150206 (25 bp)
ACATGTGTAACTGCGCTTTACGGGA
LOC_Os08g16600
Os.47927.1.S1_at--329--8031Chr08:10150204..10150228 (25 bp)
GGAGTTGGGTGTTCCATTCTTGAAA
LOC_Os08g16600
Os.47927.1.S1_at--1061--1391Chr08:10150275..10150299 (25 bp)
AGACAGTATTTTGGTGCTCAGGGAT
LOC_Os08g16600
Os.47927.1.S1_at--58--5491Chr08:10150316..10150340 (25 bp)
GAACTTTTTGTTCCATGTGCTCCCA
LOC_Os08g16600
Os.47927.1.S1_at--633--8691Chr08:10150331..10150355 (25 bp)
TGTGCTCCCAAGTCATGCTAATGAT
LOC_Os08g16600
Target Sequence 
TGCGCTATCAACTCCTTTGACATAGATCCTGAGAACCCTTCTGATGTGGTTTNGTGCNCTGGAATGGGAATCNATTGGTG
TACTAACACGTGGTAGAGATACAATGGNTGAAGAATGAANAGTTCTATTTCGTTAAAAATTTCCTGCATGGTCTTCCTTA
AATTGTGNGGGGCAACTATGCCAAGATAAACGTCTTCTAGGAATGACACTGATTCANNNNGTCCAACTTATGTCTGGTGC
TGGAGNAAATTGTCTTGCGACTTTGGGTCGTTGGTTCGTTGCCTTGTCGGTGTAATTGAAGATCGTGGAAATTTGATGTG
AAAGATTATCGTTCCTAGTTTCCTACATGTGTAACTGCGCTTTACGGGAGTTGGGTGTTCCATTCTTGAAATGCAAGTTG
GAATGGTCCAAAACTATTTTGGCAAGTTCTTTGTTGTAGACAGTATTTTGGTGCTCAGGGATGGGTCGACTGTTGTGAGA
ACTTTTTGTTCCATGTGCTCCCAAGTCATGCTAATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis