Browse Element(s) Details


OsAffx.29237.1.S1_at

Description tigr:9636.m01665
TID=OsAffx.29237.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1658011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16520OsAffx.7527.1.S1_x_at1/118+10111005..10112326hypothetical protein
LOC_Os08g16530Os.1924.1.S1_at2/118+10113176..10117227transposon protein, putative, unclassified
LOC_Os08g16530OsAffx.10632.1.S1_at1/118+10113176..10117227transposon protein, putative, unclassified
LOC_Os08g16540NANA8+10117480..10120552retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g16550OsAffx.16318.1.S1_x_at1/118+10120725..10121714hypothetical protein
LOC_Os08g16570OsAffx.17026.1.S1_at11/118+10132247..10135382expressed protein
LOC_Os08g16570Os.48405.1.A1_at8/118+10132247..10135382expressed protein
LOC_Os08g16580OsAffx.29237.1.S1_at11/118+10136050..10138356Leucine Rich Repeat family protein, expressed
LOC_Os08g16590OsAffx.29238.1.S1_at10/118+10141571..10143433hypothetical protein
LOC_Os08g16600Os.47927.1.S1_at11/118+10145728..10150415WD-40 repeat protein family, putative, expressed
LOC_Os08g16610Os.9431.1.A1_a_at11/118+10153890..10159336N terminus of Rad21/Rec8 like protein, expressed
LOC_Os08g16620OsAffx.17027.1.S1_at11/118+10162020..10163102hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29237.1.S1_at--621--5451Chr08:10136624..10136648 (25 bp)
GAACGGTTGCACTCATGGCAGGTAT
LOC_Os08g16580
OsAffx.29237.1.S1_at--998--351Chr08:10136538..10136562 (25 bp)
ATGAGGTTCCTAAACTTGTCGAGAA
LOC_Os08g16580
OsAffx.29237.1.S1_at--826--5351Chr08:10136473..10136497 (25 bp)
GAAGATCCTCGAGTCTCTTGATTTT
LOC_Os08g16580
OsAffx.29237.1.S1_at--830--8511Chr08:10136445..10136469 (25 bp)
TGGAATGAACTCTCCGGCTCTATTC
LOC_Os08g16580
OsAffx.29237.1.S1_at--1--4831Chr08:10136429..10136453 (25 bp)
GCTCTATTCCTTCAAGCATCTCAAA
LOC_Os08g16580
OsAffx.29237.1.S1_at--457--6491Chr08:10136353..10136377 (25 bp)
GATACCATCTGGTTATCAACTCCGG
LOC_Os08g16580
OsAffx.29237.1.S1_at--673--10411Chr08:10136341..10136365 (25 bp)
TTATCAACTCCGGACGCTTGCAGAT
LOC_Os08g16580
OsAffx.29237.1.S1_at--940--5551Chr08:10136199..10136223 (25 bp)
GAAATCCTAAGCTGGTTTTACTCCG
LOC_Os08g16580
OsAffx.29237.1.S1_at--924--10331Chr08:10136183..10136207 (25 bp)
TTTACTCCGTATTAGCTGGGCTGGT
LOC_Os08g16580
OsAffx.29237.1.S1_at--897--5851Chr08:10136118..10136142 (25 bp)
GAGCCTTGGAGATTTGCCTTTTTTG
LOC_Os08g16580
OsAffx.29237.1.S1_at--1160--4431Chr08:10136103..10136127 (25 bp)
GCCTTTTTTGGCCAAGTTGATCATC
LOC_Os08g16580
Target Sequence 
GAACGGTTGCACTCATGGCAGGTATTGATCTATCAAGCAACTATCTCTCCAATGAGATTCCTTCGGAGTTGTGCAATCTT
GAAAGCATGAGGTTCCTAAACTTGTCGAGAAATCATCTATCTGGCATTATTCCTAAAGAGATTGGCAATTTGAAGATCCT
CGAGTCTCTTGATTTTTCTTGGAATGAACTCTCCGGCTCTATTCCTTCAAGCATCTCAAATTTGATGTCTCTTAGTTCAC
TAAATTTGTCCAACAATCATTTATCAGGTGAGATACCATCTGGTTATCAACTCCGGACGCTTGCAGATCCATCAATTTAT
AGCAACAACTTTGGGTTATGTGGCTTCCCATTGAACATTTCATGTTCAGATGGTTCAAATTCTACATCAGCATTGATAGG
GGGAAGTACAGACAGCCAGGAACTTGAAATCCTAAGCTGGTTTTACTCCGTATTAGCTGGGCTGGTCTTCGGATTTTGGC
TGTGGTTCGGGGTACTGCTTTTGTTTGAGCCTTGGAGATTTGCCTTTTTTGGCCAAGTTGATCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29237.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis