Browse Element(s) Details


OsAffx.17028.1.S1_at

Description tigr:9636.m01671
TID=OsAffx.17028.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1663010/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16600Os.47927.1.S1_at11/118+10145728..10150415WD-40 repeat protein family, putative, expressed
LOC_Os08g16610Os.9431.1.A1_a_at11/118+10153890..10159336N terminus of Rad21/Rec8 like protein, expressed
LOC_Os08g16620OsAffx.17027.1.S1_at11/118+10162020..10163102hypothetical protein
LOC_Os08g16630OsAffx.17028.1.S1_at10/118+10171942..10173452F-box domain containing protein
LOC_Os08g16640OsAffx.5843.1.S1_at11/118+10174556..10174951hypothetical protein
LOC_Os08g16650OsAffx.17029.1.S1_at11/118+10181751..10183076hypothetical protein
LOC_Os08g16660Os.7891.2.S1_at10/118+10183796..10186859Eukaryotic aspartyl protease family protein, expressed
LOC_Os08g16670OsAffx.17030.1.S1_at11/118+10191817..10195370F-box domain containing protein
LOC_Os08g16680Os.46785.2.S1_x_at2/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16680OsAffx.442.1.S1_x_at1/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16680OsAffx.30226.2.S1_x_at1/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17028.1.S1_at--617--5831Chr08:10172578..10172602 (25 bp)
GACCTGCTCCTGGTGGACGTGATCA
LOC_Os08g16630
OsAffx.17028.1.S1_at--896--9271Chr08:10172585..10172609 (25 bp)
TCCTGGTGGACGTGATCACCGGCGT
LOC_Os08g16630
OsAffx.17028.1.S1_at--30--9311Chr08:10172738..10172762 (25 bp)
TCCCGCTGCTGAACGCGGCGAACAT
LOC_Os08g16630
OsAffx.17028.1.S1_at--87--8991Chr08:10172747..10172771 (25 bp)
TGAACGCGGCGAACATCTCCGTCGA
LOC_Os08g16630
OsAffx.17028.1.S1_at--1090--1811Chr08:10172771..10172795 (25 bp)
ACGCCTTCCTCGGAACTGAAGATTT
LOC_Os08g16630
OsAffx.17028.1.S1_at--210--1971Chr08:10172785..10172809 (25 bp)
ACTGAAGATTTTCTCGACACTCTCT
LOC_Os08g16630
OsAffx.17028.1.S1_at--705--5631Chr08:10172800..10172824 (25 bp)
GACACTCTCTGGCTGGTTTCGCGTG
LOC_Os08g16630
OsAffx.17028.1.S1_at--192--8591Chr08:10172813..10172837 (25 bp)
TGGTTTCGCGTGTGAAGGTGCTCAA
LOC_Os08g16630
OsAffx.17028.1.S1_at--972--1031Chr08:10172828..10172852 (25 bp)
AGGTGCTCAAGTTCTCTGTCAGAGA
LOC_Os08g16630
OsAffx.17028.1.S1_at--1127--3851NONE
CTGTCAGAGACAGGGAGAACCGGAA
NONE
OsAffx.17028.1.S1_at--1043--6811Chr08:10173396..10173420 (25 bp)
GTTTTTGGACTATGTATATTGGAGA
LOC_Os08g16630
Target Sequence 
GACCTGCTCCTGGTGGACGTGATCACCGGCGTCGTCGCCGGGGGCGAGAAGAAGGTGGAGGAGGAGGAGCCGGAGGCGTG
GGCGATCCGGGCGCCCAAGCTCCACTCGCTGACGCTCTGGACGCCGGCCGTCGACAACGGCTGCCGCGTCGCCGGCGAGC
TCCCGCTGCTGAACGCGGCGAACATCTCCGTCGACGCCTTCCTCGGAACTGAAGATTTTCTCGACACTCTCTGGCTGGTT
TCGCGTGTGAAGGTGCTCAAGTTCTCTGTCAGAGACAGGGAGAACCGGAAGGAGTATGATTTAGTAGTAGTTTTTGGACT
ATGTATATTGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis