Browse Element(s) Details


OsAffx.5843.1.S1_at

Description tigr:9636.m01672
TID=OsAffx.5843.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1664011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16600Os.47927.1.S1_at11/118+10145728..10150415WD-40 repeat protein family, putative, expressed
LOC_Os08g16610Os.9431.1.A1_a_at11/118+10153890..10159336N terminus of Rad21/Rec8 like protein, expressed
LOC_Os08g16620OsAffx.17027.1.S1_at11/118+10162020..10163102hypothetical protein
LOC_Os08g16630OsAffx.17028.1.S1_at10/118+10171942..10173452F-box domain containing protein
LOC_Os08g16640OsAffx.5843.1.S1_at11/118+10174556..10174951hypothetical protein
LOC_Os08g16650OsAffx.17029.1.S1_at11/118+10181751..10183076hypothetical protein
LOC_Os08g16660Os.7891.2.S1_at10/118+10183796..10186859Eukaryotic aspartyl protease family protein, expressed
LOC_Os08g16670OsAffx.17030.1.S1_at11/118+10191817..10195370F-box domain containing protein
LOC_Os08g16680Os.46785.2.S1_x_at2/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16680OsAffx.442.1.S1_x_at1/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g16680OsAffx.30226.2.S1_x_at1/118+10195777..10199749retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5843.1.S1_at--984--7051Chr08:10174606..10174630 (25 bp)
GTCAATGGCGAACGGAGGCCGACGC
LOC_Os08g16640
OsAffx.5843.1.S1_at--946--7251Chr08:10174650..10174674 (25 bp)
GTCCGGCGTGGAGCGAATACCGCAT
LOC_Os08g16640
OsAffx.5843.1.S1_at--440--4671Chr08:10174655..10174679 (25 bp)
GCGTGGAGCGAATACCGCATGAGAA
LOC_Os08g16640
OsAffx.5843.1.S1_at--740--291Chr08:10174666..10174690 (25 bp)
ATACCGCATGAGAAGGTCAGTGATG
LOC_Os08g16640
OsAffx.5843.1.S1_at--531--10011Chr08:10174735..10174759 (25 bp)
TAGAGCACGAAGTGGTCCTGGAGGA
LOC_Os08g16640
OsAffx.5843.1.S1_at--983--1471Chr08:10174774..10174798 (25 bp)
AGAATTAAGACGGGCCGCACGGCCA
LOC_Os08g16640
OsAffx.5843.1.S1_at--884--4511Chr08:10174787..10174811 (25 bp)
GCCGCACGGCCAATGGCATGGAGTT
LOC_Os08g16640
OsAffx.5843.1.S1_at--901--7991Chr08:10174815..10174839 (25 bp)
GGATGGAGGGCTGCCTGCACACGGA
LOC_Os08g16640
OsAffx.5843.1.S1_at--277--9111Chr08:10174867..10174891 (25 bp)
TGCTCCTCGGCTCGTGAAGAATCAA
LOC_Os08g16640
OsAffx.5843.1.S1_at--719--9451Chr08:10174873..10174897 (25 bp)
TCGGCTCGTGAAGAATCAACGGGAA
LOC_Os08g16640
OsAffx.5843.1.S1_at--67--5151Chr08:10174885..10174909 (25 bp)
GAATCAACGGGAAACAAAAGAGTGT
LOC_Os08g16640
Target Sequence 
GTCAATGGCGAACGGAGGCCGACGCGATGGGTATCGAGGGTGGCGTCCGGCGTGGAGCGAATACCGCATGAGAAGGTCAG
TGATGGCGCGGCAGCCAGCGAGCTCGGTGTCGGAGTCGAAGAGAAGGGGTAGAGCACGAAGTGGTCCTGGAGGAGGCCAG
GCTGGGGAAGAATTAAGACGGGCCGCACGGCCAATGGCATGGAGTTGGGGGATGGAGGGCTGCCTGCACACGGAGGCGAT
GGCGACGGGATGGAGGGCTGCTGCTCCTCGGCTCGTGAAGAATCAACGGGAAACAAAAGAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis