Browse Element(s) Details


Os.19330.1.S1_x_at

Description gb:AK071382.1
DB_XREF= gi:32981405
TID=Os.19330.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033030H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091N20, full insert sequence.
FL= gb:AK071382.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2977011/11MYND finger family protein, expressed
LOC_Os06g162801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29730NANA7+17473093..17477552transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os07g29740Os.47463.1.S1_x_at2/117+17479001..17483862transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29740Os.14491.2.S1_x_at1/117+17479001..17483862transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g29750OsAffx.16482.1.S1_x_at11/117+17489020..17491246Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29750OsAffx.16482.1.S1_at11/117+17489020..17491246Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29750Os.46631.1.S1_x_at3/117+17489020..17491246Glycosyl hydrolases family 16 protein, expressed
LOC_Os07g29760Os.20514.1.S1_x_at11/117+17494808..17496308Cysteine proteinase 1 precursor, putative, expressed
LOC_Os07g29760OsAffx.22518.1.S1_x_at1/117+17494808..17496308Cysteine proteinase 1 precursor, putative, expressed
LOC_Os07g29770Os.19330.3.S1_at11/117+17496954..17507041MYND finger family protein, expressed
LOC_Os07g29770Os.19330.1.S1_x_at11/117+17496954..17507041MYND finger family protein, expressed
LOC_Os07g29780Os.36953.2.S1_x_at11/117+17504162..17506617pollen-specific kinase partner protein, putative, expressed
LOC_Os07g29780Os.36953.1.S1_at10/117+17504162..17506617pollen-specific kinase partner protein, putative, expressed
LOC_Os07g29794Os.37000.2.S1_x_at11/117+17512388..17519010expressed protein
LOC_Os07g29810OsAffx.28664.1.S1_at11/117+17522393..17526402NB-ARC domain containing protein
LOC_Os07g29820Os.26923.1.A1_at9/117+17527858..17533293NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19330.1.S1_x_at--895--8371Chr07:17506401..17506425 (25 bp)
GGCGATGGCGTATAGTGCTCCTGCT
LOC_Os07g29770
Os.19330.1.S1_x_at--351--5431Chr07:17506448..17506472 (25 bp)
GAACGACGACACACGGAACAGCGGT
LOC_Os07g29770
Os.19330.1.S1_x_at--62--4651Chr07:17506476..17506500 (25 bp)
GCGTAGTCGCGATCGTAGCCGTGTT
LOC_Os07g29770
Os.19330.1.S1_x_at--1156--491Chr07:17506487..17506511 (25 bp)
ATCGTAGCCGTGTTTGTGGAAGCCA
LOC_Os07g29770
Os.19330.1.S1_x_at--1065--5411Chr07:17506505..17506529 (25 bp)
GAAGCCAGGGAAGCCTGAACCTCCA
LOC_Os07g29770
Os.19330.1.S1_x_at--828--9212Chr07:17506526..17506550 (25 bp)
TCCACTCATGGTTGCAGCTGTTCTT
LOC_Os07g29770
Os.19330.1.S1_x_at--1154--9171Chr07:17506553..17506577 (25 bp)
TGCCTGCTTCTGAAGACCTGCAAGA
LOC_Os07g29770
Os.19330.1.S1_x_at--312--7851Chr07:17506634..17506658 (25 bp)
GGTACCTGGTGTTATTGACTTGCTT
LOC_Os07g29770
Os.19330.1.S1_x_at--23--3631Chr07:17506652..17506676 (25 bp)
CTTGCTTTCCCTTTTTTGGTGATCA
LOC_Os07g29770
Os.19330.1.S1_x_at--50--8851Chr07:17506671..17506695 (25 bp)
TGATCATGTCATGGCTGTCACTTAC
LOC_Os07g29770
Os.19330.1.S1_x_at--542--6271Chr07:17506833..17506857 (25 bp)
GATGTCTTGCAGGTTTGGTGAATGT
LOC_Os07g29770
Target Sequence 
GGCGATGGCGTATAGTGCTCCTGCTCCTCGCCACCGCCATTGTCGGAGAACGACGACACACGGAACAGCGGTCGCGCGTA
GTCGCGATCGTAGCCGTGTTTGTGGAAGCCAGGGAAGCCTGAACCTCCACTCATGGTTGCAGCTGTTCTTGCTGCCTGCT
TCTGAAGACCTGCAAGAAAGANGATGAATGGGAATGGCACAAGAATGGAGGCATGCCAAGAACAGAGAGGATAGGTACCT
GGTGTTATTGACTTGCTTTCCCTTTTTTGGTGATCATGTCATGGCTGTCACTTACAAGTGTATGGAACAATAATAAAGGC
ATAGGGGCTATCTTTCCTTGACATGGGCTGTTGCAATCAATATGGTTTGCNAATTATGCAGGCATGTGANCGATTTGCCC
CCACAGTGTANGGACAATAAGGTTGGATTGGTTGGATGTCTTGCAGGTTTGGTGAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19330.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis