Browse Element(s) Details


Os.19374.2.S1_x_at

Description gb:AK069674.1
DB_XREF= gi:32979698
TID=Os.19374.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19374 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0485G01.28 (P0485G01.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027J07, full insert sequence.
FL= gb:AK069674.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4844011/11Glycosyltransferase family 43 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48390Os.26447.1.A1_at11/111+28060576..28066692leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g48400OsAffx.11517.1.S1_at11/111+28067527..28067748hypothetical protein
LOC_Os01g48410Os.6355.1.S1_at11/111+28069074..28071989pollen-specific kinase partner protein, putative, expressed
LOC_Os01g48420Os.39012.1.S1_s_at11/111+28072620..28074766AhpC/TSA family protein, expressed
LOC_Os01g48420Os.2618.1.S1_at10/111+28072620..28074766AhpC/TSA family protein, expressed
LOC_Os01g48430OsAffx.21508.1.S1_x_at11/111+28081498..28082613hypothetical protein
LOC_Os01g48430OsAffx.21508.1.S1_at11/111+28081498..28082613hypothetical protein
LOC_Os01g48440Os.19374.2.S1_x_at11/111+28084613..28088542Glycosyltransferase family 43 protein, expressed
LOC_Os01g48440Os.19374.1.S1_at10/111+28084613..28088542Glycosyltransferase family 43 protein, expressed
LOC_Os01g48450Os.9356.1.S1_at11/111+28104280..28107882Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g48460Os.32252.1.S1_at11/111+28107520..28109113No apical meristem protein, expressed
LOC_Os01g48470OsAffx.23713.1.S1_at11/111+28112546..28113059hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006486biological_processprotein amino acid glycosylation
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19374.2.S1_x_at--1157--7931Chr01:28085110..28085134 (25 bp)
GGATAATTGCACTCGTGTTATGGTC
LOC_Os01g48440
Os.19374.2.S1_x_at--214--8031Chr01:28085084..28085108 (25 bp)
GGAATTTCGAACTGGAACCTCCTCA
LOC_Os01g48440
Os.19374.2.S1_x_at--996--1151Chr01:28085059..28085083 (25 bp)
AGTCAACTACCCAATTGGCTGGCTG
LOC_Os01g48440
Os.19374.2.S1_x_at--803--3671Chr01:28084979..28085003 (25 bp)
CTTTTTGTTTGCCATCCTAGTGTGA
LOC_Os01g48440
Os.19374.2.S1_x_at--603--6351Chr01:28084952..28084976 (25 bp)
GATGCCTTCCTGAACTTGGTAGCGT
LOC_Os01g48440
Os.19374.2.S1_x_at--522--4811Chr01:28084909..28084933 (25 bp)
GCTCTGCCAAGATCTGGTCCAAATA
LOC_Os01g48440
Os.19374.2.S1_x_at--455--10591Chr01:28084833..28084857 (25 bp)
TTCTCTCTGTTGCATTCTTTTCTAT
LOC_Os01g48440
Os.19374.2.S1_x_at--20--10311Chr01:28084798..28084822 (25 bp)
TTTCCCCATATTCATCCAGCTAGAT
LOC_Os01g48440
Os.19374.2.S1_x_at--764--10311Chr01:28084750..28084774 (25 bp)
TTTCTCGTTTCTGTCCGTTATATAC
LOC_Os01g48440
Os.19374.2.S1_x_at--933--9691Chr01:28084713..28084737 (25 bp)
TCACAGATGTGAATGTTCCCCTCCA
LOC_Os01g48440
Os.19374.2.S1_x_at--175--10651Chr01:28084698..28084722 (25 bp)
TTCCCCTCCATTGGAACTGTTGAAG
LOC_Os01g48440
Target Sequence 
GGATAATTGCACTCGTGTTATGGTCTGGAATTTCGAACTGGAACCTCCTCAAGTCAACTACCCAATTGGCTGGCTGCTGC
AGAGGAATCTGGATGCTGTTNTGCCAATAACATAACTGTCCTGCTGCTNCTCTTTTTGTTTGCCATCCTAGTGTGAATGA
TGCCTTCCTGAACTTGGTAGCGTCCAGGATCATGAGAAGCTGCTCTGCCAAGATCTGGTCCAAATAATGTCATACTAGTA
ACAGTTGAAAAGTGAGAAGCCTGACAAAAGAAAGTTTTTCTCTCTGTTGCATTCTTTTCTATATGTTCATTTTTTCCCCA
TATTCATCCAGCTAGATATAGCCATGTACATTTCATTTTTTTTCTCGTTTCTGTCCGTTATATACATACATATCACCTCA
CAGATGTGAATGTTCCCCTCCATTGGAACTGTTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19374.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis