Browse Element(s) Details


Os.19401.1.S1_at

Description gb:AK064510.1
DB_XREF= gi:32974528
TID=Os.19401.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19401 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-E05, full insert sequence.
FL= gb:AK064510.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0410011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g04050Os.23253.1.S1_at11/113+1831985..1836891protein kinase family protein, putative, expressed
LOC_Os03g04060Os.1191.1.S1_at11/113+1839540..1840897Basic endochitinase precursor, putative, expressed
LOC_Os03g04070Os.21395.1.S1_at4/113+1841469..1843356No apical meristem protein, expressed
LOC_Os03g04080Os.50019.1.S1_at11/113+1849915..1850610expressed protein
LOC_Os03g04090NANA3+1852155..1852452hypothetical protein
LOC_Os03g04100Os.19401.1.S1_at11/113+1852474..1857551expressed protein
LOC_Os03g04110Os.11983.1.S1_at11/113+1858022..1860820LysM domain containing protein, expressed
LOC_Os03g04120Os.52327.1.S1_at11/113+1861089..1863179AMP-dependent synthetase and ligase family protein, putative, expressed
LOC_Os03g04130Os.27166.1.A1_s_at11/113+1865013..1867742AMP-dependent synthetase and ligase family protein, putative, expressed
LOC_Os03g04140Os.17315.1.S1_at11/113+1871938..1876420serine O-acetyltransferase family protein, expressed
LOC_Os03g04150Os.52917.1.S1_at1/113+1878028..1881306transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19401.1.S1_at--119--2211Chr03:1857121..1857145 (25 bp)
ACAACTTCTGTCGATACAACCTGTC
LOC_Os03g04100
Os.19401.1.S1_at--257--3271Chr03:1857168..1857192 (25 bp)
CAACTATTGACTTCAGCGCTTCATC
LOC_Os03g04100
Os.19401.1.S1_at--954--5271Chr03:1857242..1857266 (25 bp)
GAATGAGTCATACCTGTGCCAGTAC
LOC_Os03g04100
Os.19401.1.S1_at--257--2711Chr03:1857274..1857298 (25 bp)
AAGCTTTTCTGCATAGGTTTCCAAT
LOC_Os03g04100
Os.19401.1.S1_at--213--4131Chr03:1857341..1857365 (25 bp)
CGCAGTATTGCGTTCATTGGTTCAT
LOC_Os03g04100
Os.19401.1.S1_at--1039--8571Chr03:1857358..1857382 (25 bp)
TGGTTCATTCATTCTTTCGTAGCAT
LOC_Os03g04100
Os.19401.1.S1_at--458--4891Chr03:1857397..1857421 (25 bp)
GCTTAGCGTTTTATCGTTCCGGACT
LOC_Os03g04100
Os.19401.1.S1_at--133--6711Chr03:1857412..1857436 (25 bp)
GTTCCGGACTGCTGTTTGATCAATT
LOC_Os03g04100
Os.19401.1.S1_at--121--7551Chr03:1857451..1857475 (25 bp)
GTGGCTCGCGATCATATTGTCTCTA
LOC_Os03g04100
Os.19401.1.S1_at--182--51Chr03:1857466..1857490 (25 bp)
ATTGTCTCTATGCTTATCCATGTGC
LOC_Os03g04100
Os.19401.1.S1_at--94--5571Chr03:1857527..1857551 (25 bp)
GAAAGCTCTCAATGATATCCACGCG
LOC_Os03g04100
Target Sequence 
ACAACTTCTGTCGATACAACCTGTCGAAAGGCCACCAGGAGTGTACCCAACTATTGACTTCAGCGCTTCATCTCCAGCTC
CACCTTCGGATGATCCACCAGGCATGCCTCCTTCGCCTCTGGAATGAGTCATACCTGTGCCAGTACAAAAGAGAAGCTTT
TCTGCATAGGTTTCCAATTTTGCCTGTAAGGGGAACATTCTTTGTAGAAAGGGGATCAACCGCAGTATTGCGTTCATTGG
TTCATTCATTCTTTCGTAGCATGTTTTCCTTCCGCGGCTTAGCGTTTTATCGTTCCGGACTGCTGTTTGATCAATTAGGC
GAAATAATCAGTGGCTCGCGATCATATTGTCTCTATGCTTATCCATGTGCATTTTTGCATAAAAGCTCCGTATAAATAAC
GGAGGAGAAAGCTCTCAATGATATCCACGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis