Browse Element(s) Details


Os.19426.1.S1_at

Description gb:AK066236.1
DB_XREF= gi:32976254
TID=Os.19426.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19426 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013057F13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013057F13, full insert sequence.
FL= gb:AK066236.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2683411/11aspartyl protease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g26800OsAffx.22946.1.S1_at5/114+15631557..15634033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g26800OsAffx.286.1.S1_at1/114+15631557..15634033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g26810OsAffx.3909.1.S1_at11/114+15635953..15636949hypothetical protein
LOC_Os04g26810OsAffx.16205.1.S1_at2/114+15635953..15636949hypothetical protein
LOC_Os04g26820NANA4+15637320..15638253hypothetical protein
LOC_Os04g26834Os.19426.1.S1_at11/114+15657201..15666302aspartyl protease family protein, putative, expressed
LOC_Os04g26850OsAffx.3910.1.S1_at11/114+15677823..15687363Importin-beta N-terminal domain containing protein
LOC_Os04g26850Os.17179.1.A1_at1/114+15677823..15687363Importin-beta N-terminal domain containing protein
LOC_Os04g26850Os.22487.1.S1_at1/114+15677823..15687363Importin-beta N-terminal domain containing protein
LOC_Os04g26860OsAffx.3911.1.S1_at11/114+15688826..15692255importin like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0031225cellular_componentanchored to membrane
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19426.1.S1_at--1008--6031Chr04:15658028..15658051 (24 bp)
GAGATCTGGTCCTTTCAAATAAGTT
LOC_Os04g26834
Os.19426.1.S1_at--587--2831Chr04:15658008..15658032 (25 bp)
AAGTTAGTTGTCTATGACCTGGAAA
LOC_Os04g26834
Os.19426.1.S1_at--861--7131Chr04:15657978..15658002 (25 bp)
GTCATTGGCTGGACTGAGTACAACT
LOC_Os04g26834
Os.19426.1.S1_at--636--2511Chr04:15657579..15657603 (25 bp)
AACATACACTGTTGACGCTCACAAC
LOC_Os04g26834
Os.19426.1.S1_at--747--4831Chr04:15657563..15657587 (25 bp)
GCTCACAACATCTCCTCAGGATGGA
LOC_Os04g26834
Os.19426.1.S1_at--957--8011Chr04:15657541..15657565 (25 bp)
GGAGGTTTCATTGGCAGAAGCATTT
LOC_Os04g26834
Os.19426.1.S1_at--789--4951Chr04:15657522..15657546 (25 bp)
GCATTTGGCTGTGTTGCTGGTAACA
LOC_Os04g26834
Os.19426.1.S1_at--871--4871Chr04:15657487..15657511 (25 bp)
GCTATCTAATATTCTAACTCCGGTG
LOC_Os04g26834
Os.19426.1.S1_at--281--2551Chr04:15657472..15657496 (25 bp)
AACTCCGGTGTATGACACGGACTCT
LOC_Os04g26834
Os.19426.1.S1_at--935--6951Chr04:15657341..15657365 (25 bp)
GTACGCTACACAATGTACCCGAGTG
LOC_Os04g26834
Os.19426.1.S1_at--518--2031Chr04:15657272..15657296 (25 bp)
ACTATGGCTGAATGTGCTTTTGGGA
LOC_Os04g26834
Target Sequence 
GAGATCTGGTCCTTTCAAATAAGTTAGTTGTCTATGACCTGGAAAATCAAGTCATTGGCTGGACTGAGTACAACTGTTCC
TCTAGCATTAAAATTAAGGATGAACAGACAGGGGCAACATACACTGTTGACGCTCACAACATCTCCTCAGGATGGAGGTT
TCATTGGCAGAAGCATTTGGCTGTGTTGCTGGTAACANATGGTGTACAGCTATCTAATATTCTAACTCCGGTGTATGACA
CGGACTCTAGTGGAAATTCATTTGATTTAAATTCTTTTCACCAAAGAGGGAAAAAGGGTAGGGGTGTTTAGATGGNGNTC
TCTGACCACTCGAGAGAACTGAAAAGGAAACNTTGTACGCTACACAATGTACCCGAGTGTGTAGTGTAATGTAATGTAAT
GATGTGGTGACTGGTGAGAAAATACTATGGCTGAATGTGCTTTTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis