Browse Element(s) Details


Os.19525.1.S1_at

Description gb:CB638190
DB_XREF= gi:29633181
DB_XREF=OSJNEa06D10.f
CLONE=OSJNEa06D10
TID=Os.19525.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.19525 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g311209/11beta scruin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31080OsAffx.19542.3.S1_x_at10/114+18390485..18394720retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g31090Os.52823.1.S1_at9/114+18402286..18406681hypothetical protein
LOC_Os04g31090OsAffx.14062.1.S1_at7/114+18402286..18406681hypothetical protein
LOC_Os04g31090Os.17370.1.S1_x_at1/114+18402286..18406681hypothetical protein
LOC_Os04g31100NANA4+18408145..18408402hypothetical protein
LOC_Os04g31110Os.24608.1.S1_at11/114+18411480..18414039expressed protein
LOC_Os04g31120Os.15607.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19105.1.S1_at11/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31120Os.19525.1.S1_at9/114+18415284..18421722beta scruin, putative, expressed
LOC_Os04g31130OsAffx.26265.1.S1_at11/114+18427330..18427677hypothetical protein
LOC_Os04g31140Os.24325.1.A1_at11/114+18429825..18432081expressed protein
LOC_Os04g31150OsAffx.14063.1.S1_at11/114+18432518..18432968hypothetical protein
LOC_Os04g31160OsAffx.14064.1.S1_at10/114+18441403..18445020hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19525.1.S1_at--174--7931Chr04:18417939..18417963 (25 bp)
GGATTCATCCATGTTTATTAAGTAG
LOC_Os04g31120
Os.19525.1.S1_at--595--151Chr04:18417882..18417906 (25 bp)
ATTATGGACTTACCCTGTTTATTGA
LOC_Os04g31120
Os.19525.1.S1_at--874--5911Chr04:18417820..18417844 (25 bp)
GAGCTTTTAGACTTAGTGATTCATT
LOC_Os04g31120
Os.19525.1.S1_at--1014--3671Chr04:18417765..18417789 (25 bp)
CTTTCCCTTATTGCGCATCATCAAG
LOC_Os04g31120
Os.19525.1.S1_at--165--10192Chr05:23836598..23836618 (21 bp)
TATATAACCCCTGAATATTTCCGGT
NONE
Os.19525.1.S1_at--939--10651Chr04:18417682..18417706 (25 bp)
TTCCGGTATTTTAGTTTCCTATATG
LOC_Os04g31120
Os.19525.1.S1_at--616--7831NONE
GGTAATTGTATGATGACTCCCTATA
NONE
Os.19525.1.S1_at--577--5711NONE
GACTCCCTATATTTGTATGATCTCC
NONE
Os.19525.1.S1_at--778--6531Chr04:18417564..18417588 (25 bp)
GATTTAATCTTCAATTTGTCTGATG
LOC_Os04g31120
Os.19525.1.S1_at--158--10431Chr04:18417464..18417488 (25 bp)
TTATCTCTTTAATTTTGTCCATGTA
LOC_Os04g31120
Os.19525.1.S1_at--621--10811Chr04:18417450..18417474 (25 bp)
TTGTCCATGTAGGTAACTGGCTGTG
LOC_Os04g31120
Target Sequence 
GGATTCATCCATGTTTATTAAGTAGGGNCAGTATCTATTTTGGCGAGGATAAGGGTTATTATGGACTTACCCTGTTTATT
GAGTAGGGGAAGTAAAATCTAGTNTAAGTTCTTTGAAATGAGCTTTTAGACTTAGTGATTCATTAAAGCNAATATAGCAN
TGGAGAAACGTCAANCTTTCCCTTATTGCGCATCATCAAGGCGATGGACACNCCTTGGTTTCACCCTNNNNTNACCTNTC
ATATATAACCCCTGAATATTTCCGGTATTTTAGTTTCCTATATGTCANTTTTGATTCTCTGATCAATTTTTTTTATTTTA
AANCAGTGGTAATTGTATGATGACTCCCTATATTTGTATGATCTCCNNTTTATATATGATTTAATCTTCAATTTGTCTGA
TGTTTTTTAATACTTGTACTGTTATTTTGATTTTTGTAATTAATAATTTTATTTGAGAAAAACCGTACTCTAAAAAATTA
TCTCTTTAATTTTGTCCATGTAGGTAACTGGCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19525.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis