Browse Element(s) Details


Os.19624.1.S1_at

Description gb:AK067148.1
DB_XREF= gi:32977166
TID=Os.19624.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1045D11.20 (B1045D11.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095L18, full insert sequence.
FL= gb:AK067148.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g277205/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27660OsAffx.10637.4.S1_s_at5/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27660OsAffx.10637.1.S1_s_at5/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27660OsAffx.10637.3.S1_s_at3/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27660OsAffx.10637.2.S1_at1/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27670OsAffx.32056.1.S1_x_at5/111+15758784..15761808transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27670OsAffx.32056.1.S1_at3/111+15758784..15761808transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27680OsAffx.23421.1.S1_s_at11/111+15765890..15767242hypothetical protein
LOC_Os01g27690OsAffx.23421.2.S1_at9/111+15767883..15769001hypothetical protein
LOC_Os01g27700OsAffx.30603.4.S1_x_at11/111+15772324..15774499Multicopper oxidase family protein, expressed
LOC_Os01g27700OsAffx.30603.2.S1_x_at1/111+15772324..15774499Multicopper oxidase family protein, expressed
LOC_Os01g27710NANA1+15775867..15776478hypothetical protein
LOC_Os01g27720Os.19624.1.S1_at5/111+15780486..15784678zinc finger family protein, putative, expressed
LOC_Os01g27730Os.6742.1.S1_at11/111+15788950..15793626expressed protein
LOC_Os01g27740Os.22658.1.S1_at11/111+15801150..15805188DnaJ domain containing protein, expressed
LOC_Os01g27750Os.7136.1.S1_at11/111+15806834..15820413Type I 3-dehydroquinase family protein, expressed
LOC_Os01g27750Os.7136.2.S1_x_at11/111+15806834..15820413Type I 3-dehydroquinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19624.1.S1_at--909--10131Chr01:15784113..15784137 (25 bp)
TATGCAGGCAACCTGTTGAGGGCCT
LOC_Os01g27720
Os.19624.1.S1_at--574--3871Chr01:15784125..15784149 (25 bp)
CTGTTGAGGGCCTTCGCGAGATAGA
LOC_Os01g27720
Os.19624.1.S1_at--286--7971Chr01:15784178..15784202 (25 bp)
GGATCTCAGCAGTTAACAGCACCTC
LOC_Os01g27720
Os.19624.1.S1_at--648--8151Chr01:15784282..15784306 (25 bp)
GGAAATCGGAAGTTACCTGGTAGCA
LOC_Os01g27720
Os.19624.1.S1_at--946--7611Chr01:15784439..15784463 (25 bp)
GGGACAATCGTTTTCTTGTTCTAAT
LOC_Os01g27720
Os.19624.1.S1_at--850--771NONE
ATGTGTTCTTTCTAGTGGATGCCCT
NONE
Os.19624.1.S1_at--736--6351NONE
GATGCCCTTATTGTTCTGTGATGTC
NONE
Os.19624.1.S1_at--661--10871NONE
TTGGAAGTTTTTCCTCCTACTGGCA
NONE
Os.19624.1.S1_at--664--9251NONE
TCCTACTGGCATGTCCCTGGGAAGA
NONE
Os.19624.1.S1_at--859--3471NONE
CAGGCAACATTTTGGTGCTACTTTT
NONE
Os.19624.1.S1_at--44--7791NONE
GGTGCTACTTTTACCATGCTTTAGA
NONE
Target Sequence 
TATGCAGGCAACCTGTTGAGGGCCTTCGCGAGATAGAGGTTGATAACAAACCGATNCCCCAACAAGGATCTCAGCAGTTA
ACAGCACCTCAATAAAGNNNCATCTGATTGCAAGCAAACTNCCTGTACATNTGTCATNTGTATATAAAAGGTCTGTGCTT
TCGGGAAGGGGAAATCGGAAGTTACCTGGTAGCAACAAAGCTGTTTCTGATANTNTTTGNTNANAGGATGAACCTACTGG
GATTTAANTGTCTACNTTTGGACCNCCAAACTCGACTTATTACTTGGAAAAGACACTATTTTAGATTGTATGGTTCAANC
CTTTTGCAGGGGACAATCGTTTTCTTGTTCTAATTTAGTTACTCATCCATCACTTTGATGTGTTTAAGAGCATNCGATGT
GTTCTTTCTAGTGGATGCCCTTATTGTTCTGTGATGTCACCAATTGGAAGTTTTTCCTCCTACTGGCATGTCCCTGGGAA
GACAAGCCAGGCAACATTTTGGTGCTACTTTTACCATGCTTTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis