Browse Element(s) Details


Os.1993.1.S1_at

Description gb:AK121118.1
DB_XREF= gi:37990741
TID=Os.1993.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0638D12.11 (P0638D12.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074B04, full insert sequence.
FL= gb:AK121118.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5373011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53710Os.27860.1.A1_at11/111+31195259..31198450Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g53710Os.27860.3.S1_x_at3/111+31195259..31198450Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os01g53720Os.8015.1.S1_at1/111+31205940..31212133expressed protein
LOC_Os01g53730Os.1993.1.S1_at11/111+31212020..31213186expressed protein
LOC_Os01g53740OsAffx.23779.1.S1_at11/111+31216647..31217504hypothetical protein
LOC_Os01g53750Os.36264.1.S1_x_at11/111+31224595..31227916Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g53750Os.36264.1.S1_at11/111+31224595..31227916Glycosyl hydrolases family 17 protein, expressed
LOC_Os01g53760OsAffx.2325.1.S1_at11/111+31229592..31229906hypothetical protein
LOC_Os01g53770Os.57329.1.S1_at10/111+31232433..31233107expressed protein
LOC_Os01g53779Os.50571.1.A1_at11/111+31236278..31243324expressed protein
LOC_Os01g53779Os.46986.1.S1_at2/111+31236278..31243324expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1993.1.S1_at--602--7991Chr01:31212581..31212605 (25 bp)
GGATGGGAACCAGGAAGCTTGTCAT
LOC_Os01g53730
Os.1993.1.S1_at--929--5391Chr01:31212568..31212592 (25 bp)
GAAGCTTGTCATATACCTGGCGCAA
LOC_Os01g53730
Os.1993.1.S1_at--971--9631Chr01:31212386..31212410 (25 bp)
TCAGGGTTTCATCTCTGTTCTTTTT
LOC_Os01g53730
Os.1993.1.S1_at--548--451Chr01:31212376..31212400 (25 bp)
ATCTCTGTTCTTTTTTCGTTGAGGA
LOC_Os01g53730
Os.1993.1.S1_at--1055--2451Chr01:31212205..31212229 (25 bp)
AACAGCCTTCTGTCGAAATTTAAAG
LOC_Os01g53730
Os.1993.1.S1_at--747--2711Chr01:31212183..31212207 (25 bp)
AAGCATATGTCTGCAGTACATCCAA
LOC_Os01g53730
Os.1993.1.S1_at--424--5031Chr01:31212171..31212195 (25 bp)
GCAGTACATCCAATTGCCTTGGTTA
LOC_Os01g53730
Os.1993.1.S1_at--1157--6751Chr01:31212122..31212146 (25 bp)
GTTAAGGGAGTCCTTTGGTCATCAA
LOC_Os01g53730
Os.1993.1.S1_at--682--211Chr01:31212066..31212090 (25 bp)
ATATTCCAGACACACAAATTGTAGC
LOC_Os01g53730
Os.1993.1.S1_at--702--3291Chr01:31212054..31212078 (25 bp)
CACAAATTGTAGCATGGCTGGTCAT
LOC_Os01g53730
Os.1993.1.S1_at--225--8351Chr01:31212039..31212063 (25 bp)
GGCTGGTCATGAATGTTTGCCAAAC
LOC_Os01g53730
Target Sequence 
GGATGGGAACCAGGAAGCTTGTCATATACCTGGCGCAAACAGCACATCAATAGCCAAGAAGTCTGGAAGTTCTTGCGCAA
ATCTGATGGCCAGGAATAACACCAAAAGCATGCTCTATAGGNCCTCCCCCAATTCCTGTAAACAAAAGCGGATATCATCA
GTAGGAACAGTATCGAAATGTTTTTTTTTTGGGGGGTCAGGGTTTCATCTCTGTTCTTTTTTCGTTGAGGATTTTGTTGA
CAAGCATATTAGCCTGTCACGGATGTAAGAGGATTTCGTTCTCTGCCATATACAGAGAGTCGTCTTGTTCAAGGAGACAT
CGATTCTGTTTGTAAATACTACAATGAAATTTTTCATTGGACTGCCTGGGGATGATGAACAGCCTTCTGTCGAAATTTAA
AGCATATGTCTGCAGTACATCCAATTGCCTTGGTTAAAAGAAGAAGAAGAACAGCTTAACGTTAAGGGAGTCCTTTGGTC
ATCAAAGATGAAAACAAAAGGAATTCAATTCTATAAATATTCCAGACACACAAATTGTAGCATGGCTGGTCATGAATGTT
TGCCAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis