Browse Element(s) Details


Os.19967.1.S1_at

Description gb:BI801318
DB_XREF= gi:16574022
DB_XREF=H046C05
CLONE=H046C05
TID=Os.19967.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.19967 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative lipid transfer protein (OSJNBa0062C05.17), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g361104/11Nonspecific lipid-transfer protein 2G, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36070Os.46576.2.S1_x_at11/1110+18958410..18958712Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36070Os.46576.1.S1_x_at2/1110+18958410..18958712Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36090Os.46576.2.S1_x_at11/1110+18969981..18970283Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36090Os.46576.1.S1_x_at3/1110+18969981..18970283Nonspecific lipid-transfer protein 2, putative
LOC_Os10g36100Os.46576.2.S1_x_at11/1110+18974175..18974717Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36100Os.46576.1.S1_at11/1110+18974175..18974717Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36100Os.46576.1.S1_x_at11/1110+18974175..18974717Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os10g36110Os.19967.1.S1_at4/1110+18977838..18978410Nonspecific lipid-transfer protein 2G, putative, expressed
LOC_Os10g36110Os.6845.1.S1_at1/1110+18977838..18978410Nonspecific lipid-transfer protein 2G, putative, expressed
LOC_Os10g36130OsAffx.18530.1.S1_at10/1110+18981593..18982543hypothetical protein
LOC_Os10g36134NANA10+18984726..18986038retrotransposon protein, putative, unclassified
LOC_Os10g36140Os.31312.5.S1_x_at4/1110+18987726..18991023retrotransposon protein, putative, unclassified
LOC_Os10g36140Os.31312.2.S1_x_at4/1110+18987726..18991023retrotransposon protein, putative, unclassified
LOC_Os10g36150OsAffx.22492.1.S1_at1/1110+18991653..18995086retrotransposon protein, putative, unclassified
LOC_Os10g36150OsAffx.22492.1.S1_x_at1/1110+18991653..18995086retrotransposon protein, putative, unclassified
LOC_Os10g36160Os.6845.1.S1_at11/1110+19000766..19001362nonspecific lipid-transfer protein precursor, putative, expressed
LOC_Os10g36160Os.46576.2.S1_x_at1/1110+19000766..19001362nonspecific lipid-transfer protein precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19967.1.S1_at--761--7331Chr10:18978296..18978320 (25 bp)
GTGCAGTGCGATCCCGGGAAGCTGT
LOC_Os10g36110
Os.19967.1.S1_at--191--1611NONE
AGCTGCTAGGCTGGGCTTCGATCGC
NONE
Os.19967.1.S1_at--610--10071NONE
TAGGCTGGGCTTCGATCGCCATGAT
NONE
Os.19967.1.S1_at--984--6371NONE
GATCGCCATGATGCGTGGCGTATAT
NONE
Os.19967.1.S1_at--140--5251Chr10:18978010..18978034 (25 bp)
GAATCAGTAAGAACTATCGATCGAT
LOC_Os10g36110
Os.19967.1.S1_at--613--2531Chr10:18977999..18978023 (25 bp)
AACTATCGATCGATTAATGCACCCC
LOC_Os10g36110
Os.19967.1.S1_at--677--4191Chr10:18977977..18978001 (25 bp)
CCCCGTACGTACGTGTTTGATCGAT
LOC_Os10g36110
Os.19967.1.S1_at--340--4051NONE
CGATCGATCAGCTGGTGTCTCCTCA
NONE
Os.19967.1.S1_at--363--7751NONE
GGTGTCTCCTCACTATTTATGTGTT
NONE
Os.19967.1.S1_at--569--10111NONE
TATGTGTTGAGCTAAGTTTCCGATC
NONE
Os.19967.1.S1_at--74--1571NONE
AGCTAAGTTTCCGATCTTGTGTGGG
NONE
Target Sequence 
GTGCAGTGCGATCCCGGGAAGCTGTCGGCGTGCGCGGTCCCGATCTTCTTNGGNACNGCGCCNGTCGAAGTCGTGCTGCT
CCAACCTGCGCGCGCAGGAGAAGGACGGGTNGCTTCTGCCAGTACGCGAGAGACCCGATGTACGCGTCCTACATCAATAG
CACCAACGCCCGCNATACCATCGCCGCCTGCGGCATCGCCNTTCCCAGCTGCTAGGCTGGGCTTCGATCGCCATGATGCG
TGGCGTATATTAAATATATGGTGTGTGCTTGAATAAAGGATGTGAGTTTGAATCAGTAAGAACTATCGATCGATTAATGC
ACCCCCCGTACGTACGTGTTTGATCGATCGATCAGCTGGTGTCTCCTCACTATTTATGTGTTGAGCTAAGTTTCCGATCT
TGTGTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19967.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis