Browse Element(s) Details


Os.2000.2.S1_x_at

Description gb:AU030308
DB_XREF= gi:3763556
DB_XREF=AU030308
CLONE=E50885_2Z
TID=Os.2000.2
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2000 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor protein kinase tmk1 precursor (P0638D12.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5384010/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53800OsAffx.2326.2.S1_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53800OsAffx.2326.1.S1_x_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53800OsAffx.2326.1.S1_at11/111+31249986..31254274Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810OsAffx.23781.1.S1_x_at10/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810OsAffx.23781.1.S1_at10/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810Os.36961.2.S1_x_at6/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53810Os.36961.1.S1_x_at5/111+31260448..31264223Transferrin receptor-like dimerisation domain containing protein, expressed
LOC_Os01g53820NANA1+31266539..31267841expressed protein
LOC_Os01g53830NANA1+31273196..31274451transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g53840Os.2000.2.S1_x_at10/111+31276227..31281586protein kinase family protein, putative, expressed
LOC_Os01g53850OsAffx.11592.2.S1_at11/111+31282309..31283241hypothetical protein
LOC_Os01g53860OsAffx.11593.2.S1_s_at11/111+31288752..31292062expressed protein
LOC_Os01g53870OsAffx.24046.1.S1_at11/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.2.S1_x_at4/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.7.S1_x_at3/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870OsAffx.24046.3.S1_x_at2/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53870Os.53053.1.S1_at2/111+31294495..31296828hAT family dimerisation domain containing protein
LOC_Os01g53880Os.11608.1.S1_at11/111+31302613..31306303AUX/IAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2000.2.S1_x_at--1072--2291NONE
AAAGGCGTTCCTTGGCATCAGTTAT
NONE
Os.2000.2.S1_x_at--744--11Chr01:31276772..31276796 (25 bp)
ATTGACCCTAATCTAATGGACCTGT
LOC_Os01g53840
Os.2000.2.S1_x_at--72--851Chr01:31276757..31276781 (25 bp)
ATGGACCTGTATCCACATGACTGTG
LOC_Os01g53840
Os.2000.2.S1_x_at--891--2791Chr01:31276623..31276647 (25 bp)
AAGATGGCCATGCTAGCGAAACAGT
LOC_Os01g53840
Os.2000.2.S1_x_at--73--951Chr01:31276592..31276616 (25 bp)
AGGAAGATCCTGTTCTTCGGCCAGA
LOC_Os01g53840
Os.2000.2.S1_x_at--221--5131Chr01:31276540..31276564 (25 bp)
GCAAATACTGCTGTCGTCGATCGAG
LOC_Os01g53840
Os.2000.2.S1_x_at--739--5411Chr01:31276512..31276536 (25 bp)
GAAGCGACGCTAGCTGGGAACAGCC
LOC_Os01g53840
Os.2000.2.S1_x_at--106--551Chr01:31276456..31276480 (25 bp)
ATCCTGTAAGATTGGCCTGGTTGCT
LOC_Os01g53840
Os.2000.2.S1_x_at--706--8571Chr01:31276439..31276463 (25 bp)
TGGTTGCTACGGTGCTATCCCATGC
LOC_Os01g53840
Os.2000.2.S1_x_at--1083--9791Chr01:31276366..31276390 (25 bp)
TAACCTTCTCCTGCATTTTGCTGGT
LOC_Os01g53840
Os.2000.2.S1_x_at--488--6811Chr01:31276323..31276347 (25 bp)
GTTTTCTGCATCTTCTTTTCAAAGT
LOC_Os01g53840
Target Sequence 
AAAGGCGTTCCTTGGCATCAGTTATGTTGAGTGCACTAAAGAATTGTCGTAACTCAATGTATATGGGGAGCCTGAAAGAC
TGCATTGACCCTAATCTAATGGACCTGTATCCACATGACTGTGTATACAAGATGGCCATGCTAGCGAAACAGTGCGTGGA
GGAAGATCCTGTTCTTCGGCCAGACATGAAGCAGGCAGTAATCACGNTATCGCAAATACTGCTGTCGTCGATCGAGTGGG
AAGCGACGCTAGCTGGGAACAGCCAAGTGTTCAGTGGTCTTGTGGCTGGGAGGTGATCCTGTAAGATTGGCCTGGTTGCT
ACGGTGCTATCCCATGCGCTCTTCGGTGATCTCCTTCCCTGCTCCACTAGAGGCGTTTTCCCCTGTAACCTTCTCCTGCA
TTTTGCTGGTTTCTTGCCCAGTTGAGCNGTTTTCTGCATCTTCTTTTCAAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2000.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis