Browse Element(s) Details


Os.20077.1.S1_at

Description gb:AK107028.1
DB_XREF= gi:32992237
TID=Os.20077.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-A09, full insert sequence.
FL= gb:AK107028.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0797011/11Transcription factor TGA4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07940OsAffx.29093.1.S1_at11/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.16886.1.S1_at11/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.8747.3.S1_x_at2/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.30177.1.S1_x_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.27021.1.S1_x_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.27021.1.S1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.50043.1.A1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.29172.1.S1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07950OsAffx.16887.1.S1_at11/118+4481383..4489254NB-ARC domain containing protein, expressed
LOC_Os08g07960Os.15548.1.S1_at11/118+4490341..4495898mRNA-associated protein mrnp 41, putative, expressed
LOC_Os08g07970Os.20077.1.S1_at11/118+4499401..4501882Transcription factor TGA4, putative, expressed
LOC_Os08g07970Os.20077.3.S1_x_at11/118+4499401..4501882Transcription factor TGA4, putative, expressed
LOC_Os08g07984NANA8+4509192..4509464NA
LOC_Os08g08000OsAffx.5745.1.S1_x_at11/118+4517322..4525712expressed protein
LOC_Os08g08000Os.9252.1.S1_at10/118+4517322..4525712expressed protein
LOC_Os08g08000Os.51691.1.S2_at10/118+4517322..4525712expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20077.1.S1_at--648--1371Chr08:4499959..4499983 (25 bp)
AGAGCTCGGCTGACATCTTGCTGAT
LOC_Os08g07970
Os.20077.1.S1_at--1014--9111Chr08:4499941..4499965 (25 bp)
TGCTGATGACGTGCAGGCCGACCAT
LOC_Os08g07970
Os.20077.1.S1_at--1064--3371Chr08:4499743..4499767 (25 bp)
CAGCCTGATCGATCACCGGAGGAGG
LOC_Os08g07970
Os.20077.1.S1_at--510--1091Chr08:4499670..4499694 (25 bp)
AGTGGCTCAGTTTGAGTTCTCTGCA
LOC_Os08g07970
Os.20077.1.S1_at--323--6071Chr08:4499657..4499681 (25 bp)
GAGTTCTCTGCATTTTCATTTGCAA
LOC_Os08g07970
Os.20077.1.S1_at--44--3151Chr08:4499620..4499644 (25 bp)
AATTAAACGGACGTGTTCACTTCAT
LOC_Os08g07970
Os.20077.1.S1_at--745--6751Chr08:4499606..4499630 (25 bp)
GTTCACTTCATCATAGGATAGCAGC
LOC_Os08g07970
Os.20077.1.S1_at--421--3611Chr08:4499491..4499515 (25 bp)
CTTGGGTAGTTATTTGCGTCGCTCA
LOC_Os08g07970
Os.20077.1.S1_at--532--4631Chr08:4499476..4499500 (25 bp)
GCGTCGCTCAACTTGTAATTGCTGC
LOC_Os08g07970
Os.20077.1.S1_at--1002--7071Chr08:4499462..4499486 (25 bp)
GTAATTGCTGCCATTTCCATGGATA
LOC_Os08g07970
Os.20077.1.S1_at--865--31Chr08:4499407..4499431 (25 bp)
ATTGGGAGTGATTCCAGGCGCCTGA
LOC_Os08g07970
Target Sequence 
AGAGCTCGGCTGACATCTTGCTGATGACGTGCAGGCCGACCATCTCCGGCAGGAGACGCTGCAGAACATGTACAAGATCC
TGACGCTGCCGCAGGCGGCGCGCGGGCTCCTCGCGCTCGGCGACTACTGCCAGCGCCTCCGCGCGCTCAGCTCGCTCTGG
GCGGCGCGCCCGCGCGAGCCGGCGTAAAGCGAGCTGAGCTCGCCGCCGGCAACGGCCAGCCTGATCGATCACCGGAGGAG
GAGCAAGATGTCGTCGCTGAGCTCGCCGGGGAAGACGACATGGAGCTCAAGTGGCTCAGTTTGAGTTCTCTGCATTTTCA
TTTGCAAGGACAGGAAAGAAATTAAACGGACGTGTTCACTTCATCATAGGATAGCAGCAGCAGCAGTAGCTAGGAGGAGG
AGGAGGAGGAGGAGAATTTGAATTTGAATTTAAAAGACGTGTAAATATTTACTACAGTAATTAACTTGCTTGGGTAGTTA
TTTGCGTCGCTCAACTTGTAATTGCTGCCATTTCCATGGATAAAAAAAATGTCAGGGATGGTCATATGAAAAATTGGGAG
TGATTCCAGGCGCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis