Browse Element(s) Details


Os.20077.3.S1_x_at

Description gb:AK109294.1
DB_XREF= gi:32994503
TID=Os.20077.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-D03, full insert sequence.
FL= gb:AK109294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0797011/11Transcription factor TGA4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07940OsAffx.29093.1.S1_at11/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.16886.1.S1_at11/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.8747.3.S1_x_at2/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.30177.1.S1_x_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.27021.1.S1_x_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.27021.1.S1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.50043.1.A1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.29172.1.S1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07950OsAffx.16887.1.S1_at11/118+4481383..4489254NB-ARC domain containing protein, expressed
LOC_Os08g07960Os.15548.1.S1_at11/118+4490341..4495898mRNA-associated protein mrnp 41, putative, expressed
LOC_Os08g07970Os.20077.1.S1_at11/118+4499401..4501882Transcription factor TGA4, putative, expressed
LOC_Os08g07970Os.20077.3.S1_x_at11/118+4499401..4501882Transcription factor TGA4, putative, expressed
LOC_Os08g07984NANA8+4509192..4509464NA
LOC_Os08g08000OsAffx.5745.1.S1_x_at11/118+4517322..4525712expressed protein
LOC_Os08g08000Os.9252.1.S1_at10/118+4517322..4525712expressed protein
LOC_Os08g08000Os.51691.1.S2_at10/118+4517322..4525712expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20077.3.S1_x_at--787--5931Chr08:4501643..4501667 (25 bp)
GAGCAGCGCGCCAAGGTACATGACC
LOC_Os08g07970
Os.20077.3.S1_x_at--1100--5871Chr08:4501436..4501456 (21 bp)
GAGCCCAAGTTCGAGAGCCAGCTAG
LOC_Os08g07970
Os.20077.3.S1_x_at--1117--4451Chr08:4501300..4501324 (25 bp)
GCCTCTGCAGCATGGAGACGATCAA
LOC_Os08g07970
Os.20077.3.S1_x_at--643--5771Chr08:4501284..4501308 (25 bp)
GACGATCAAGACAACGCTGCAGCTC
LOC_Os08g07970
Os.20077.3.S1_x_at--1131--1571Chr08:4501264..4501288 (25 bp)
AGCTCTGCAAGAATCGCCGAGGCAT
LOC_Os08g07970
Os.20077.3.S1_x_at--747--911Chr08:4501245..4501269 (25 bp)
AGGCATGCGTCGGACAGCTTCGAGC
LOC_Os08g07970
Os.20077.3.S1_x_at--440--2151Chr08:4501232..4501256 (25 bp)
ACAGCTTCGAGCAGGAGGCGTCCAA
LOC_Os08g07970
Os.20077.3.S1_x_at--433--9211Chr08:4500920..4501236 (25 bp)
TCCAAGCCTCGAGACAAGATCCAGA
LOC_Os08g07970
Os.20077.3.S1_x_at--56--1451Chr08:4501041..4501065 (25 bp)
AGAAGCAGCTCGCAAGAGCCGGCTA
LOC_Os08g07970
Os.20077.3.S1_x_at--458--1871Chr08:4500887..4500911 (25 bp)
ACGAGCCGGATGAAGCTGGCGCATC
LOC_Os08g07970
Os.20077.3.S1_x_at--20--8051Chr08:4500855..4500879 (25 bp)
GGAGATCACCCGAGCAAGGCAACAG
LOC_Os08g07970
Target Sequence 
GAGCAGCGCGCCAAGGTACATGACCTCGGCGGCGCCGGCGGCCGCGCAGTTCGCTGCGCCGGCGCCGGCGGCGATGGGGA
TCTACGACCGCCGGCACCATCCCCTCGCCGCCGGCGTCTGGGGAGACCACCCCTTCATCCGCCCGGACACCACCGCCAGC
ACCAGCAACGCCGCCGCCGCCGCCATGGTCGTCGCGCCGCCGCCGCTAACAGAGCCCAAGTTCGAGAGCCAGCTAGCTCT
GCCTCTGCAGCATGGAGACGATCAAGACAACGCTGCAGCTCTGCAAGAATCGCCGAGGCATGCGTCGGACAGCTTCGAGC
AGGAGGCGTCCAAGCCTCGAGACAAGATCCAGAGGCGGCTCGCGCAGAACAGAGAAGCAGCTCGCAAGAGCCGGCTACGG
AAAAAGGCTTACATCCAGAACCTGGAGACGAGCCGGATGAAGCTGGCGCATCTGGAGCAGGAGATCACCCGAGCAAGGCA
ACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20077.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis