Browse Element(s) Details

Os.20086.1.S1_at

Description

gb:AK067782.1
DB_XREF= gi:32977800
TID=Os.20086.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20086 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013117L19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013117L19, full insert sequence.
FL= gb:AK067782.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02940	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02870	OsAffx.15237.1.S1_at	11/11	6	+	1052171..1055079	hypothetical protein
LOC_Os06g02880	OsAffx.29663.1.S1_at	8/11	6	+	1055494..1060323	retrotransposon protein, putative, unclassified
LOC_Os06g02880	OsAffx.380.1.S1_at	4/11	6	+	1055494..1060323	retrotransposon protein, putative, unclassified
LOC_Os06g02880	Os.27345.1.S1_at	1/11	6	+	1055494..1060323	retrotransposon protein, putative, unclassified
LOC_Os06g02880	OsAffx.13325.1.S1_at	1/11	6	+	1055494..1060323	retrotransposon protein, putative, unclassified
LOC_Os06g02900	Os.14214.1.S1_at	11/11	6	+	1062537..1065533	Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g02910	NA	NA	6	+	1070114..1070593	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g02920	NA	NA	6	+	1073319..1074518	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g02930	OsAffx.15239.1.S1_at	11/11	6	+	1077073..1078054	expressed protein
LOC_Os06g02930	Os.7163.1.S1_at	11/11	6	+	1077073..1078054	expressed protein
LOC_Os06g02940	Os.20086.1.S1_at	11/11	6	+	1078930..1079932	expressed protein
LOC_Os06g02949	NA	NA	6	+	1087381..1088185	NA
LOC_Os06g02960	Os.52298.1.S1_at	11/11	6	+	1089059..1091611	expressed protein
LOC_Os06g02970	NA	NA	6	+	1092764..1093351	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g02980	OsAffx.30475.9.S1_s_at	11/11	6	+	1094473..1095463	ATP synthase F1, epsilon subunit family protein
LOC_Os06g02980	OsAffx.30475.1.S1_s_at	8/11	6	+	1094473..1095463	ATP synthase F1, epsilon subunit family protein
LOC_Os06g02980	OsAffx.30475.5.S1_x_at	4/11	6	+	1094473..1095463	ATP synthase F1, epsilon subunit family protein
LOC_Os06g02990	NA	NA	6	+	1098388..1099181	hypothetical protein
LOC_Os06g03000	NA	NA	6	+	1100366..1101751	retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.20086.1.S1_at--206--899	1	Chr06:1079351..1079375 (25 bp)	TGAAGCTGCATTACACGCCGTTCGA	LOC_Os06g02940
Os.20086.1.S1_at--248--477	1	Chr06:1079388..1079412 (25 bp)	GCTGCTCAACGAAGACGACGCCTCG	LOC_Os06g02940
Os.20086.1.S1_at--505--725	1	Chr06:1079551..1079575 (25 bp)	GTCCGATTCCTCATCGGGAAGGCCT	LOC_Os06g02940
Os.20086.1.S1_at--436--557	1	Chr06:1079620..1079644 (25 bp)	GACTTGTTCAAACGCCCTACCGTAT	LOC_Os06g02940
Os.20086.1.S1_at--335--455	1	Chr06:1079633..1079657 (25 bp)	GCCCTACCGTATCATTCAATCATAA	LOC_Os06g02940
Os.20086.1.S1_at--264--617	1	Chr06:1079682..1079706 (25 bp)	TGGGCCGGAAACAGTCTAGCGATTG	LOC_Os06g02940
Os.20086.1.S1_at--1132--999	1	Chr06:1079698..1079722 (25 bp)	TAGCGATTGCTATTACCTGCTGCTC	LOC_Os06g02940
Os.20086.1.S1_at--558--911	1	Chr06:1079723..1079747 (25 bp)	TGCTGCCTGCAATTCTACTAGTGTC	LOC_Os06g02940
Os.20086.1.S1_at--965--313	1	Chr06:1079753..1079777 (25 bp)	AATTATTTATCTGCTGCTCTCTCTG	LOC_Os06g02940
Os.20086.1.S1_at--623--477	1	Chr06:1079765..1079789 (25 bp)	GCTGCTCTCTCTGTCTATTAATTAA	LOC_Os06g02940
Os.20086.1.S1_at--139--795	1	Chr06:1079861..1079885 (25 bp)	GGATATATTTGTAGTCTCTCTATGT	LOC_Os06g02940

Target Sequence

TGAAGCTGCATTACACGCCGTTCGACGGCGAGCCCACGCTGCTCAACGAAGACGACGCCTCGTCGGTGCGGACGCCGTTC
GTGCAGCCGCCGCGGAACACGACGGCCATCCCGGTGCGGGTGTTCGTCAGCGGCGACTACTNGGGTCCNNANACATGATG
AGAGGCNACGNACATCCCGATCNCCGCGCANGGTGACGGCCNCCGTCCGATTCCTCATCGGGAAGGCCTGCACCAGGTCC
TACCACATCGNCCGTCTCCNGCTACCTCGGCCTCGACTTGTTCAAACGCCCTACCGTATCATTCAATCATAATAATACAG
CCGANTTGCGTCGCAGCTGGGCCGGAAACAGTCTAGCGATTGCTATTACCTGCTGCTCTGCTGCCTGCAATTCTACTAGT
GTCTCTTTAATTATTTATCTGCTGCTCTCTCTGTCTATTAATTAATTATGCATGTAAAATCCTCCATCAAANCAAATGTA
AGGTATATTTTATTTTCTGATTTTTCTAAATGAGATGGATATATTTGTAGTCTCTCTATGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis