Browse Element(s) Details


Os.20118.1.A1_s_at

Description gb:CB684670
DB_XREF= gi:29688395
DB_XREF=OSJNEf14G17.r
CLONE=OSJNEf14G17
TID=Os.20118.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.20118 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_201249.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0715011/11Amidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07100OsAffx.31628.1.S1_at11/1112+3478314..3481494hypothetical protein
LOC_Os12g07110Os.15600.1.S1_a_at11/1112+3482903..3488186AMP-binding enzyme family protein, expressed
LOC_Os12g07120Os.52612.1.S1_s_at11/1112+3494956..3496683GATA zinc finger family protein, expressed
LOC_Os12g07140Os.26948.1.S1_at11/1112+3498499..3501238expressed protein
LOC_Os12g07150Os.20118.1.A1_s_at11/1112+3502115..3508255Amidase family protein, expressed
LOC_Os12g07160Os.24613.1.S1_at11/1112+3513880..3520715Viral A-type inclusion protein repeat containing protein, expressed
LOC_Os12g07170OsAffx.24099.1.S1_x_at1/1112+3522302..3524423transposon protein, putative, Pong sub-class
LOC_Os12g07180Os.26430.1.A1_at9/1112+3524545..3526563expressed protein
LOC_Os12g07190Os.21230.1.S1_at11/1112+3530358..3535425CBS domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009684biological_processindoleacetic acid biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0004040molecular_functionamidase activity
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0017068molecular_functionglutamyl-tRNA(Gln) amidotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20118.1.A1_s_at--938--3191Chr12:3502991..3503264 (25 bp)
CAATGACCGGTGTGACTGCCTACAA
LOC_Os12g07150
Os.20118.1.A1_s_at--164--5731Chr12:3502978..3503002 (25 bp)
GACTGCCTACAAGCTGCAAGACGAC
LOC_Os12g07150
Os.20118.1.A1_s_at--1080--9871Chr12:3502835..3502953 (25 bp)
TACATAAATGGAGCCGCGTTGGTCC
LOC_Os12g07150
Os.20118.1.A1_s_at--280--6631Chr12:3502818..3502842 (25 bp)
GTTGGTCCGGTACTCAATTGCAGGA
LOC_Os12g07150
Os.20118.1.A1_s_at--685--4991Chr12:3502799..3502823 (25 bp)
GCAGGAAACTTCCTTGGTTTGCCGG
LOC_Os12g07150
Os.20118.1.A1_s_at--219--8431Chr12:3502687..3502800 (25 bp)
GGCCATCACCGTCATGGTTGGGTAT
LOC_Os12g07150
Os.20118.1.A1_s_at--91--10851Chr12:3502670..3502694 (25 bp)
TTGGGTATGACAAAGCCGGGCTGCC
LOC_Os12g07150
Os.20118.1.A1_s_at--330--2011Chr12:3502605..3502629 (25 bp)
ACTCTGCTCCACATAGCATTTGCAA
LOC_Os12g07150
Os.20118.1.A1_s_at--513--2231Chr12:3502391..3502415 (25 bp)
AAATCCGTAGGCTGTATGTATGTCA
LOC_Os12g07150
Os.20118.1.A1_s_at--429--10731Chr12:3502345..3502369 (25 bp)
TTGCTTCGATCAAGTCTCCAACATT
LOC_Os12g07150
Os.20118.1.A1_s_at--108--751Chr12:3502260..3502284 (25 bp)
ATGTAGCTACATGACCAGAAGGACG
LOC_Os12g07150
Target Sequence 
CAATGACCGGTGTGACTGCCTACAAGCTGCAAGACGACGCGCTAAAAAGCGGAGAACTGGACTACATAAATGGAGCCGCG
TTGGTCCGGTACTCAATTGCAGGAAACTTCCTTGGTTTGCCGGCCATCACCGTCATGGTTGGGTATGACAAAGCCGGGCT
GCCCATCGGCCTCCAGTTCATCGGCAGGCCGTGGTCCGAGGCGACTCTGCTCCACATAGCATTTGCAATGCAGGAGGCGT
GCAAGAAGCACTACAAGAAGCCTGAAGTGTTNTACGATCTCCTCAAGAAAGATTAAATCCGTAGGCTGTATGTATGTCAG
AATTCAGAAAATTCAGATCATTGCTTCGATCAAGTCTCCAACATTGAAGAGAATCCATTTTAAGTTAGCACGGAAGCTGT
TCTNTCCATTTGTGTCAGGGAGAACAATGTAGCTACATGACCAGAAGGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20118.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis