Browse Element(s) Details


Os.20120.1.S1_at

Description gb:AK058263.1
DB_XREF= gi:32968281
TID=Os.20120.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-012-H08, full insert sequence.
FL= gb:AK058263.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g186706/11CjMDR1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18620OsAffx.23293.2.S1_x_at11/111+10485726..10487772Transferase family protein
LOC_Os01g18620Os.12235.2.S1_x_at3/111+10485726..10487772Transferase family protein
LOC_Os01g18630Os.48522.1.A1_s_at11/111+10488817..10492460Aspartic proteinase precursor, putative, expressed
LOC_Os01g18630Os.3623.1.S1_at9/111+10488817..10492460Aspartic proteinase precursor, putative, expressed
LOC_Os01g18640Os.2675.2.A1_at11/111+10493480..10497721epimerase, putative, expressed
LOC_Os01g18650OsAffx.22929.2.S1_x_at11/111+10498397..10500970hAT family dimerisation domain containing protein
LOC_Os01g18660Os.3625.1.S1_at11/111+10505810..10510170Isopenicillin N epimerase, putative, expressed
LOC_Os01g18670Os.20120.1.S1_at6/111+10512501..10518060CjMDR1, putative, expressed
LOC_Os01g18670OsAffx.21918.1.S1_x_at1/111+10512501..10518060CjMDR1, putative, expressed
LOC_Os01g18680OsAffx.22927.1.S1_x_at7/111+10536842..10537780retrotransposon protein, putative, unclassified
LOC_Os01g18680OsAffx.8420.1.S1_x_at1/111+10536842..10537780retrotransposon protein, putative, unclassified
LOC_Os01g18690NANA1+10538588..10540496retrotransposon protein, putative, unclassified
LOC_Os01g18700NANA1+10541749..10543926retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009926biological_processauxin polar transport
GO:0016020cellular_componentmembrane
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20120.1.S1_at--529--531Chr01:10512742..10512766 (25 bp)
ATCCCAAGATCCTTCTGCTGGATGA
LOC_Os01g18670
Os.20120.1.S1_at--360--10511Chr01:10512679..10512703 (25 bp)
TTCAAGACGCGCTGGACAGAGTGAT
LOC_Os01g18670
Os.20120.1.S1_at--522--6111Chr01:10512661..10512685 (25 bp)
GAGTGATGGTCAACCGGACAACCGT
LOC_Os01g18670
Os.20120.1.S1_at--512--8131Chr01:10512646..10512670 (25 bp)
GGACAACCGTGATCGTTGCTCACCG
LOC_Os01g18670
Os.20120.1.S1_at--639--6671Chr01:10512632..10512656 (25 bp)
GTTGCTCACCGTTTGTCTACAATAC
LOC_Os01g18670
Os.20120.1.S1_at--566--7611Chr01:10512558..10512582 (25 bp)
GGGAAAGCACGATACCTTGATGAAC
LOC_Os01g18670
Os.20120.1.S1_at--817--1551Chr01:10512489..10512513 (25 bp)
AGCTTCTTCATAGCCGCCGGTAGTA
NONE
Os.20120.1.S1_at--677--911Chr01:10512464..10512488 (25 bp)
AGGCTCCTGCAAGTGTCTGCTGAAC
NONE
Os.20120.1.S1_at--713--5191Chr01:10512411..10512435 (25 bp)
GCAATAATTCTGCAGGTGCTAGTCT
NONE
Os.20120.1.S1_at--164--10071Chr01:10512392..10512416 (25 bp)
TAGTCTTTGTTCCTCTTTTGATGGC
NONE
Os.20120.1.S1_at--862--6551Chr01:10512220..10512244 (25 bp)
GATTACCTCTCATGTGTTTGCTCTT
NONE
Target Sequence 
ATCCCAAGATCCTTCTGCTGGATGAAGCAACCNAGTGCGCTGGATGCTGAATCCGAAAGGGTGGTTCAAGACGCGCTGGA
CAGAGTGATGGTCAACCGGACAACCGTGATCGTTGCTCACCGTTTGTCTACAATACAAAATGCGGATTTGATCNCANGTC
GTCAAGAATGGAGTGATCATCGAGAAGGGAAAGCACGATACCTTGATGAACATCAAGGATGGCGCCTACGCCTCCCTCGT
CGCCCTTCATTCAGCAGCTTCTTCATAGCCGCCGGTAGTAAGGCTCCTGCAAGTGTCTGCTGAACATATATTAACAGAAC
TGGCACACACNCTGCAATAATTCTGCAGGTGCTAGTCTTTGTTCCTCTTTTGATGGCATACATAACTGCTTATAGCCANA
GAGGGAAAGGCTATACAGATAGTAAGGACCAAATGTAAATGCAACAAGTTGGTCCTTAACATATATATTAATTCATATAT
ATATATGTAACNCGGATCATAGATACCCAAATAGATGATGATTATGATTACCTCTCATGTGTTTGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis