Browse Element(s) Details


Os.20141.1.S1_at

Description gb:AK064128.1
DB_XREF= gi:32974146
TID=Os.20141.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20141 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-E08, full insert sequence.
FL= gb:AK064128.1 gb:AK108583.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3419010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34150Os.28209.1.S1_a_at11/1111+19490834..19495702expressed protein
LOC_Os11g34150Os.49389.1.S1_x_at9/1111+19490834..19495702expressed protein
LOC_Os11g34160Os.49458.1.S1_at7/1111+19500735..19502735membrane associated salt-inducible protein, putative, expressed
LOC_Os11g34170OsAffx.1939.2.A1_at11/1111+19503878..19504689hypothetical protein
LOC_Os11g34180Os.9476.1.S1_at11/1111+19507289..19512084Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os11g34190Os.20141.1.S1_at10/1111+19516989..19523582expressed protein
LOC_Os11g34190OsAffx.6412.1.S1_at1/1111+19516989..19523582expressed protein
LOC_Os11g34200Os.6787.1.S1_at11/1111+19524696..19528263Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os11g34210Os.11484.1.S1_at11/1111+19528650..19533359Aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed
LOC_Os11g34220Os.12356.1.S1_at3/1111+19534158..19538331hypothetical protein
LOC_Os11g34220Os.51660.1.S1_at1/1111+19534158..19538331hypothetical protein
LOC_Os11g34220OsAffx.14591.1.S1_at1/1111+19534158..19538331hypothetical protein
LOC_Os11g34220Os.26818.2.S1_at1/1111+19534158..19538331hypothetical protein
LOC_Os11g34230Os.51660.1.S1_at11/1111+19543742..19547707expressed protein
LOC_Os11g34230Os.12356.1.S1_at11/1111+19543742..19547707expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20141.1.S1_at--452--3291Chr11:19522825..19522849 (25 bp)
CAAAGGAACTCGAGGGCATAGATAT
LOC_Os11g34190
Os.20141.1.S1_at--203--3591Chr11:19522856..19522880 (25 bp)
CATTATCACAAGTTCTCGTCGGAGA
LOC_Os11g34190
Os.20141.1.S1_at--848--1171Chr11:19522881..19522905 (25 bp)
AGTACATCGAATTTCATACCCCTGC
LOC_Os11g34190
Os.20141.1.S1_at--926--9931Chr11:19522897..19522921 (25 bp)
TACCCCTGCCAACGCCTAAAATAGT
LOC_Os11g34190
Os.20141.1.S1_at--73--3351Chr11:19523230..19523254 (25 bp)
CACGACAGTGATTGATTCTTGCGGT
LOC_Os11g34190
Os.20141.1.S1_at--216--6571Chr11:19523243..19523267 (25 bp)
GATTCTTGCGGTTTCTAAGGTGGAA
LOC_Os11g34190
Os.20141.1.S1_at--767--9011Chr11:19523285..19523309 (25 bp)
TGCAAGTTCATCTCATGTTGATTTG
LOC_Os11g34190
Os.20141.1.S1_at--164--4311Chr11:19523319..19523343 (25 bp)
CCTAGTTGGCTGTCCGTGCGTGGAT
LOC_Os11g34190
Os.20141.1.S1_at--1025--4571Chr11:19523430..19523454 (25 bp)
GCGCAGATGATTCTTGTAGCTCCCA
LOC_Os11g34190
Os.20141.1.S1_at--122--6971Chr11:19523445..19523469 (25 bp)
GTAGCTCCCATCTCATTATTATGTA
LOC_Os11g34190
Os.20141.1.S1_at--27--5711NONE
GACTCTAGTTTGAAAACGGCGTGAC
NONE
Target Sequence 
CAAAGGAACTCGAGGGCATAGATATGAGCAACATTATCACAAGTTCTCGTCGGAGAAGTACATCGAATTTCATACCCCTG
CCAACGCCTAAAATAGTAGCTGATAGTGATGAAGATGACGAAGAAGACGCAGAAGATGACAATGATGAGGAGGTGAATGT
GGAGGGTGGAGATGAAGGTGACAATGATGTTGGAAAANCTGGCGATGGANCTGCTGATGATGCTGAGCACGACAGTGATT
GATTCTTGCGGTTTCTAAGGTGGAANCAGGCAATTCTGACCATGCAAGTTCATCTCATGTTGATTTGGCCTANACGCCTA
GTTGGCTGTCCGTGCGTGGATGGAGGCAGTTGTTNAGAAGTTTAACTTATGAGTTTANTCTGTTTANTCGAAACATATTC
TTTAGCTCTANCGTTGGTGAAACATTAGCGCAGATGATTCTTGTAGCTCCCATCTCATTATTATGTATAATATATANCAG
GTTTGTTANCTGAATTTTCGANCGTGTANTCCTGTAGACTCTAGTTTGAAAACGGCGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis