Browse Element(s) Details


Os.20201.1.S1_at

Description gb:AK065676.1
DB_XREF= gi:32975694
TID=Os.20201.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20201 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013036I11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013036I11, full insert sequence.
FL= gb:AK065676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5465010/11diacylglycerol kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g54610NANA2+33448135..33448533hypothetical protein
LOC_Os02g54624Os.22775.1.S2_a_at11/112+33451092..33455631zinc finger family protein, putative, expressed
LOC_Os02g54624Os.22775.1.S1_a_at11/112+33451092..33455631zinc finger family protein, putative, expressed
LOC_Os02g54640Os.53009.1.A1_x_at11/112+33463269..33470154Receptor family ligand binding region containing protein, expressed
LOC_Os02g54650Os.20201.1.S1_at10/112+33470359..33478115diacylglycerol kinase, putative, expressed
LOC_Os02g54670OsAffx.24869.1.S1_at11/112+33481156..33482630hypothetical protein
LOC_Os02g54680OsAffx.12642.1.S1_at11/112+33483091..33483588hypothetical protein
LOC_Os02g54690OsAffx.3073.1.S1_at11/112+33485746..33487000initiation factor 3g, putative, expressed
LOC_Os02g54700Os.10955.1.S1_at11/112+33487552..33489978RNA recognition motif family protein, expressed
LOC_Os02g54710Os.32465.1.S1_at11/112+33490132..33492293expressed protein
LOC_Os02g54720OsAffx.24870.1.S1_at11/112+33496773..33499893hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007205biological_processprotein kinase C activation
GO:0048364biological_processroot development
GO:0048366biological_processleaf development
GO:0004143molecular_functiondiacylglycerol kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20201.1.S1_at--987--7851Chr02:33471508..33471532 (25 bp)
GGTTTTGTCGAAGCTCATTCCGATG
LOC_Os02g54650
Os.20201.1.S1_at--372--3491Chr02:33471103..33471127 (25 bp)
CAGGCTGCAGCCATCAAGTTTGAAA
LOC_Os02g54650
Os.20201.1.S1_at--516--7551Chr02:33471072..33471096 (25 bp)
GTGGCCAATGGAATCGTGCGTATGT
LOC_Os02g54650
Os.20201.1.S1_at--1160--8511Chr02:33471028..33471052 (25 bp)
TGGAAACAACCACTCCTACAGGAGC
LOC_Os02g54650
Os.20201.1.S1_at--95--8071Chr02:33471008..33471032 (25 bp)
GGAGCAGTCAACCATTATCGAGATA
LOC_Os02g54650
Os.20201.1.S1_at--1055--10651Chr02:33470976..33471000 (25 bp)
TTCCTTACCCTTCTCTGATGATAAA
LOC_Os02g54650
Os.20201.1.S1_at--994--3191Chr02:33470944..33470968 (25 bp)
CAATGAGATCTTCCCCGATTTCAAT
LOC_Os02g54650
Os.20201.1.S1_at--33--391NONE
ATCAGGGTCGTATTCTAGATCGTTA
NONE
Os.20201.1.S1_at--158--5071Chr02:33470781..33470805 (25 bp)
GCAGCTGCAGGGATTAGCCATGGCC
LOC_Os02g54650
Os.20201.1.S1_at--353--3491Chr02:33470763..33470787 (25 bp)
CATGGCCGGAGCACAATCGGGCAAA
LOC_Os02g54650
Os.20201.1.S1_at--31--8751Chr02:33470607..33470631 (25 bp)
TGTAAATTACTCAGATTTCCCCTCC
LOC_Os02g54650
Target Sequence 
GGTTTTGTCGAAGCTCATTCCGATGATGGATTGCTTGAAATATTCGGTCTGAAAGAAGGTTGGCATGCTTCATTCGTTAT
GGCTGAGCTAATTAAAGCAAAGCACATTGCTCAGGCTGCAGCCATCAAGTTTGAAATGAGGGGTGGCCAATGGAATCGTG
CGTATGTTCAGATGGATGGAGAGCCATGGAAACAACCACTCCTACAGGAGCAGTCAACCATTATCGAGATAAACAAAGTT
CCTTACCCTTCTCTGATGATAAATGGGGAGCAATGAGATCTTCCCCGATTTCAATCAGGGTCGTATTCTAGATCGTTAGA
TTATGTATAGTTCGGGAGCAGCTGCAGGGATTAGCCATGGCCGGAGCACAATCGGGCAAAATGTACTGTTGTATCATATA
AATTATGTTGTGTCGTAGGTTATTTCAGTGGAAATCAAATATAACTTGATTTGTAATGTATTTTTACCGTCAAAACAAAC
AAAAAAAATCAAGTGGAAAAACACAATGTACTGTAAATTACTCAGATTTCCCCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20201.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis