Browse Element(s) Details


Os.20260.1.S1_at

Description gb:AK070715.1
DB_XREF= gi:32980739
TID=Os.20260.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20260 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative peroxidase (B1135C02.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058L02, full insert sequence.
FL= gb:AK099187.1 gb:AK059977.1 gb:AK070715.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2235211/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g22309NANA1+12523828..12524091hypothetical protein
LOC_Os01g22320Os.45902.1.A1_x_at4/111+12525855..12527244transposon protein, putative, unclassified
LOC_Os01g22320Os.56372.1.S1_at1/111+12525855..12527244transposon protein, putative, unclassified
LOC_Os01g22336Os.1559.1.S1_x_at8/111+12533842..12539494Peroxidase family protein, expressed
LOC_Os01g22336Os.41248.4.S1_x_at3/111+12533842..12539494Peroxidase family protein, expressed
LOC_Os01g22352Os.20260.1.S1_at11/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22352Os.1559.1.S1_x_at2/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22352OsAffx.6795.1.S1_at1/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22352OsAffx.15945.1.S1_at1/111+12546764..12552513Peroxidase family protein, expressed
LOC_Os01g22370Os.1563.1.S1_at11/111+12560670..12564737Peroxidase family protein, expressed
LOC_Os01g22370Os.1559.1.S1_x_at1/111+12560670..12564737Peroxidase family protein, expressed
LOC_Os01g22380Os.1564.1.S1_at11/111+12565243..12565941expressed protein
LOC_Os01g22390Os.45678.1.S1_at11/111+12567308..12577242Beige/BEACH domain containing protein, expressed
LOC_Os01g22390Os.52380.2.S1_at1/111+12567308..12577242Beige/BEACH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20260.1.S1_at--175--6151Chr01:12552141..12552165 (25 bp)
GAGGTCGCCGCGAGCTAAGCTATAC
LOC_Os01g22352
Os.20260.1.S1_at--1039--1551Chr01:12552158..12552182 (25 bp)
AGCTATACCCTTGCTGACCATGTAA
LOC_Os01g22352
Os.20260.1.S1_at--950--9751Chr01:12552218..12552242 (25 bp)
TAATGCATGACACGCACTTGCACTG
LOC_Os01g22352
Os.20260.1.S1_at--414--1851Chr01:12552229..12552253 (25 bp)
ACGCACTTGCACTGTGTGTTGTACG
LOC_Os01g22352
Os.20260.1.S1_at--176--6311Chr01:12552276..12552300 (25 bp)
GATGAAGGCTTTGTTTGCACCTACT
LOC_Os01g22352
Os.20260.1.S1_at--397--8771Chr01:12552287..12552311 (25 bp)
TGTTTGCACCTACTTGATGTGTGTA
LOC_Os01g22352
Os.20260.1.S1_at--123--6271Chr01:12552302..12552326 (25 bp)
GATGTGTGTAGTGACTCTGCCATGA
LOC_Os01g22352
Os.20260.1.S1_at--748--3771Chr01:12552316..12552340 (25 bp)
CTCTGCCATGAACGATGCACGTATA
LOC_Os01g22352
Os.20260.1.S1_at--736--9771Chr01:12552379..12552403 (25 bp)
TAGAACACCTACCAAGTTACCAACT
LOC_Os01g22352
Os.20260.1.S1_at--253--6751Chr01:12552422..12552446 (25 bp)
GTTCATGCATAAATTACGGCGCTAC
LOC_Os01g22352
Os.20260.1.S1_at--994--1931Chr01:12552437..12552461 (25 bp)
ACGGCGCTACTCATAATTCACCAAA
LOC_Os01g22352
Target Sequence 
GAGGTCGCCGCGAGCTAAGCTATACCCTTGCTGACCATGTAATATACGTCATATATATGATGATAATGTAAAATTAATAA
TGCATGACACGCACTTGCACTGTGTGTTGTACGGCCAGGGCAAGTGTGGTTGGTTGATGAAGGCTTTGTTTGCACCTACT
TGATGTGTGTAGTGACTCTGCCATGAACGATGCACGTATACAAGTATATAATTAANANNNNNNNCAGCTGGTAATAAGTA
GAACACCTACCAAGTTACCAACTTACCATGCATGAATAAATGTTCATGCATAAATTACGGCGCTACTCATAATTCACCAA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis