Browse Element(s) Details


Os.20268.1.S2_at

Description gb:AK068256.1
DB_XREF= gi:32978274
TID=Os.20268.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013147A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013147A18, full insert sequence.
FL= gb:AK064259.1 gb:AK068256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5216011/11LMBR1 integral membrane family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52120OsAffx.24830.1.S1_at11/112+31894315..31894800hypothetical protein
LOC_Os02g52130Os.5659.3.S1_x_at11/112+31902799..31905783F-box family protein, putative, expressed
LOC_Os02g52130Os.5659.1.S1_at10/112+31902799..31905783F-box family protein, putative, expressed
LOC_Os02g52140Os.16129.1.S1_at11/112+31910246..31914733Polyadenylate-binding protein 2, putative, expressed
LOC_Os02g52150Os.12257.1.S1_at11/112+31914985..31916538Hsp20/alpha crystallin family protein, expressed
LOC_Os02g52160Os.20268.1.S1_at11/112+31917945..31925043LMBR1 integral membrane family protein, putative, expressed
LOC_Os02g52160Os.20268.1.S2_at11/112+31917945..31925043LMBR1 integral membrane family protein, putative, expressed
LOC_Os02g52170Os.57301.1.S1_at11/112+31926416..31927447expressed protein
LOC_Os02g52180Os.53242.1.S1_at11/112+31946062..31947229Plastocyanin-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20268.1.S2_at--958--111Chr02:31924446..31924470 (25 bp)
ATTCAAATGTCTCTTCGCCCGAATC
LOC_Os02g52160
Os.20268.1.S2_at--1040--251Chr02:31924512..31924536 (25 bp)
ATATGCCTGTGGATTACCTTGACGA
LOC_Os02g52160
Os.20268.1.S2_at--940--3091Chr02:31924547..31924571 (25 bp)
AATACTGGTGACATGGATCCTACAT
LOC_Os02g52160
Os.20268.1.S2_at--1074--5651Chr02:31924556..31924580 (25 bp)
GACATGGATCCTACATTCCCAGGAT
LOC_Os02g52160
Os.20268.1.S2_at--695--831Chr02:31924697..31924721 (25 bp)
ATGGAGGTGGCCTTCTTGGAAGCTC
LOC_Os02g52160
Os.20268.1.S2_at--1024--8511Chr02:31924713..31924737 (25 bp)
TGGAAGCTCAGGAGTCAGGACGCCT
LOC_Os02g52160
Os.20268.1.S2_at--566--4471Chr02:31924734..31924758 (25 bp)
GCCTGCCCATCTGGAAAGCTGCAAA
LOC_Os02g52160
Os.20268.1.S2_at--349--8871Chr02:31924777..31924801 (25 bp)
TGATGACAGGTTCTGCCCTACGTGT
LOC_Os02g52160
Os.20268.1.S2_at--713--6551Chr02:31924841..31924865 (25 bp)
GATTATGGGACTTTTCTGCTCTACA
LOC_Os02g52160
Os.20268.1.S2_at--782--3831Chr02:31924856..31924880 (25 bp)
CTGCTCTACACATACAGTACATTGT
LOC_Os02g52160
Os.20268.1.S2_at--967--5591Chr02:31925019..31925043 (25 bp)
GAAATTCCATTTGTCTTGTCTACTG
LOC_Os02g52160
Target Sequence 
ATTCAAATGTCTCTTCGCCCGAATCACNTGATGAAATCTTCCAAAAATTAAAACGACGTCCTGCAGATATGCCTGTGGAT
TACCTTGACGATGATGATGANAATACTGGTGACATGGATCCTACATTCCCAGGATCAACAAGATAGGTTNTGATATATTC
TTTTAGAAGTTAGAATATGCAAGCTCAGAAATTAAAACGATTTGGTAGCATTAGATGCAGAACAGAAGATACAGGATGTA
TAGATTAGATGATGGAGGTGGCCTTCTTGGAAGCTCAGGAGTCAGGACGCCTGCCCATCTGGAAAGCTGCAAAGATAAAA
GGATGACATGATGATGACAGGTTCTGCCCTACGTGTGCAGAAAGGACAGCAGATTCTCCAAACAAGAGATCATGAGATTA
TGGGACTTTTCTGCTCTACACATACAGTACATTGTTAACATGTTTTTGTAACACTTTGGTAATGGAGAGGATGTAGTGAG
TCGAAGCTGACGAGTGTAAAATGTCTTGGAAAAAAATCACGAATATAATGTATTAACTGAAAAAGAAGTACACACAAATG
TTTTTGTGTGGTGGAAATTCCATTTGTCTTGTCTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20268.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis