Browse Element(s) Details


Os.20289.1.S1_at

Description gb:AY435041.1
DB_XREF= gi:38018634
GEN=PR-4b
TID=Os.20289.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20289 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) pathogenesis-related protein 4b (PR-4b) mRNA, complete cds.
PROD=pathogenesis-related protein 4b
FL= gb:AY435041.1 gb:AK063234.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g379608/11Barwin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37910OsAffx.7331.1.S1_at11/1111+21987840..21989290hypothetical protein
LOC_Os11g37920Os.50797.1.S1_at10/1111+21990095..21991509intracellular protease, PfpI family protein, expressed
LOC_Os11g37930NANA11+21992875..21994277hypothetical protein
LOC_Os11g37940OsAffx.7332.1.S1_at10/1111+21997840..21998927Wound-induced protein WIN2 precursor, putative, expressed
LOC_Os11g37944NANA11+21999209..21999871hypothetical protein
LOC_Os11g37950Os.20230.1.S1_at10/1111+22000685..22001753Barwin, putative, expressed
LOC_Os11g37960OsAffx.19224.1.S1_at11/1111+22004670..22006089Barwin, putative, expressed
LOC_Os11g37960Os.20289.1.S1_at8/1111+22004670..22006089Barwin, putative, expressed
LOC_Os11g37970Os.8178.1.S1_at11/1111+22010183..22011074win1 precursor, putative, expressed
LOC_Os11g37980Os.57033.1.S1_at11/1111+22012868..22016788Glycosyl transferase family 8 protein, expressed
LOC_Os11g37980Os.7393.1.S1_at1/1111+22012868..22016788Glycosyl transferase family 8 protein, expressed
LOC_Os11g37990OsAffx.31358.1.S1_at11/1111+22022254..22028270CRS1/YhbY domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009615biological_processresponse to virus
GO:0009723biological_processresponse to ethylene stimulus
GO:0008061molecular_functionchitin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20289.1.S1_at--1051--8211NONE
GGCAAATGTCTCTCGGTGACGAACA
NONE
Os.20289.1.S1_at--674--2971NONE
AATGTCTCTCGGTGACGAACACGGC
NONE
Os.20289.1.S1_at--603--2031Chr11:22005877..22005901 (25 bp)
ACTAGCAGCTAATTAACCACTCTTA
LOC_Os11g37960
Os.20289.1.S1_at--364--1712Chr11:22005892..22005916 (25 bp)
ACCACTCTTATAAACTTCCCTACAT
LOC_Os11g37960
Os.20289.1.S1_at--615--10191Chr11:22005916..22005940 (25 bp)
TATATATACACATTTCGGACAGAGG
LOC_Os11g37960
Os.20289.1.S1_at--736--9751Chr11:22005947..22005971 (25 bp)
TAATATATCTCTGCCTGATGAATGA
LOC_Os11g37960
Os.20289.1.S1_at--135--9011Chr11:22005985..22006009 (25 bp)
TGAATAATTGTGATGCTAGGCTGCT
LOC_Os11g37960
Os.20289.1.S1_at--282--4871Chr11:22005999..22006023 (25 bp)
GCTAGGCTGCTGTAGATCGATCCGT
LOC_Os11g37960
Os.20289.1.S1_at--879--10031Chr11:22006011..22006035 (25 bp)
TAGATCGATCCGTTTACACATGCTC
LOC_Os11g37960
Os.20289.1.S1_at--753--6371Chr11:22006017..22006041 (25 bp)
GATCCGTTTACACATGCTCGAAGTA
LOC_Os11g37960
Os.20289.1.S1_at--56--2191NONE
ACACATGCTCGAAGTATATCAATAA
NONE
Target Sequence 
GGCAAATGTCTCTCGGTGACGAACACGGCGACAGGGGATCAGATCACGGCGAGGATCGTGGACCAGTGCGCCAATGGGGG
GCTGGATTTAGACTGGGACACCGTCTTCTCCAAGATCGACAGCGACGGTCAAGGCTACCAGAATGGCCACCTCATCGTCG
ACTACCAGTTCGTCGACTGCGGCNATAACTAGCAGCTAATTAACCACTCTTATAAACTTCCCTACATATATATACACATT
TCGGACAGAGGAGTAATTAATATATCTCTGCCTGATGAATGAATAAAGTGGCTGGTGAATAATTGTGATGCTAGGCTGCT
GTAGATCGATCCGTTTACACATGCTCGAAGTATATCAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis