Browse Element(s) Details


Os.20299.2.S1_at

Description gb:AK069929.1
DB_XREF= gi:32979953
TID=Os.20299.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20299 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm (P0503D09.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036O09, full insert sequence.
FL= gb:AK069929.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4523411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g45180OsAffx.28912.1.S1_at11/117+26970359..26974686SWIM zinc finger family protein, expressed
LOC_Os07g45194Os.20299.4.S1_x_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.51666.1.S1_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.1.S1_a_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.1.S1_at11/117+26976668..26982211expressed protein
LOC_Os07g45194Os.20299.3.S1_at10/117+26976668..26982211expressed protein
LOC_Os07g45210Os.50051.1.S1_at11/117+26982506..26986638expressed protein
LOC_Os07g45220OsAffx.28913.1.S1_at11/117+26990272..26992942SWIM zinc finger family protein
LOC_Os07g45234Os.20299.4.S1_x_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.2.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.1.S1_a_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.51666.1.S1_at11/117+26993380..26998838expressed protein
LOC_Os07g45234Os.20299.3.S1_at10/117+26993380..26998838expressed protein
LOC_Os07g45250Os.46988.1.A1_at11/117+26999916..27002619transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g45260Os.34356.1.S1_at11/117+27004928..27006778galactinol synthase, putative, expressed
LOC_Os07g45269NANA7+27009781..27010008NA
LOC_Os07g45280Os.35897.2.S1_x_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45280Os.35897.1.A1_at11/117+27012499..27017309Mo25 protein, putative, expressed
LOC_Os07g45290OsAffx.22543.1.S1_at11/117+27017550..27021823Cytochrome P450 family protein, expressed
LOC_Os07g45290OsAffx.22543.1.S1_x_at11/117+27017550..27021823Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20299.2.S1_at--5--1571Chr07:26993699..26993723 (25 bp)
AGCTTTGCTTTCTGGACGAGTGATA
LOC_Os07g45234
Os.20299.2.S1_at--754--6112Chr07:26858630..26858654 (25 bp)
GAGTGATACCTCTGTTTCTGTAACA
NONE
Os.20299.2.S1_at--374--10612Chr07:26858645..26859081 (25 bp)
TTCTGTAACAGAGTGGGCCATGCAA
NONE
Os.20299.2.S1_at--158--6131Chr07:26993657..26993681 (25 bp)
GAGTGGGCCATGCAACATCACATTT
LOC_Os07g45234
Os.20299.2.S1_at--177--9031Chr07:26993647..26993671 (25 bp)
TGCAACATCACATTTACACACCCAT
LOC_Os07g45234
Os.20299.2.S1_at--535--2191Chr07:26993632..26993656 (25 bp)
ACACACCCATGAATATGGCCCTAAC
LOC_Os07g45234
Os.20299.2.S1_at--14--8472Chr03:33258786..33258805 (20 bp)
TGGCCCTAACACACGCTCAAAGAGA
NONE
Os.20299.2.S1_at--1097--9771Chr07:26993466..26993490 (25 bp)
TAACGGCATTGCACTTACCTAACCT
LOC_Os07g45234
Os.20299.2.S1_at--357--9971Chr07:26993451..26993475 (25 bp)
TACCTAACCTATTTTCAGACTTATG
LOC_Os07g45234
Os.20299.2.S1_at--213--4632Chr07:26993414..26993438 (25 bp)
GCGTTCAAATTTGTGTCTTGTGGAC
LOC_Os07g45234
Os.20299.2.S1_at--336--7091Chr07:26993381..26993405 (25 bp)
GTCAAAATCGATCTTCTTTTATGGC
LOC_Os07g45234
Target Sequence 
AGCTTTGCTTTCTGGACGAGTGATACCTCTGTTTCTGTAACAGAGTGGGCCATGCAACATCACATTTACACACCCATGAA
TATGGCCCTAACACACGCTCAAAGAGATAAAAATCAACGGCACATCTTTGATCTCACTAGATCTATAATGTTAACTTTAT
TATACTTATTATTTAGAATGTATATTTCGCATATGAAATTATGTATCCAAGTTTATTACAGCAAATGCTTGAATAACGGC
ATTGCACTTACCTAACCTATTTTCAGACTTATGAGGGAGAATCTAGCGTTCAAATTTGTGTCTTGTGGACTTTGAATAGT
CAAAATCGATCTTCTTTTATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20299.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis