Browse Element(s) Details


Os.20316.1.S1_at

Description gb:CB684803
DB_XREF= gi:29688528
DB_XREF=OSJNEf14K21.f
CLONE=OSJNEf14K21
TID=Os.20316.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.20316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1558011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15530Os.30699.1.S1_at11/111+8729229..8731288pentatricopeptide, putative, expressed
LOC_Os01g15540Os.24965.1.S1_at4/111+8732786..8737361Kinesin motor domain containing protein, expressed
LOC_Os01g15540Os.12733.3.S1_x_at1/111+8732786..8737361Kinesin motor domain containing protein, expressed
LOC_Os01g15550OsAffx.23261.1.S1_at11/111+8742675..8743526hypothetical protein
LOC_Os01g15560OsAffx.23262.1.S1_at9/111+8744855..8745280hypothetical protein
LOC_Os01g15570NANA1+8745907..8746146hypothetical protein
LOC_Os01g15580Os.20316.1.S1_at11/111+8747955..8752249NB-ARC domain containing protein, expressed
LOC_Os01g15590OsAffx.11064.1.S1_at11/111+8754316..8754783hypothetical protein
LOC_Os01g15600Os.1173.1.S1_at11/111+8756172..8760291Purine-rich single-stranded DNA-binding protein, putative, expressed
LOC_Os01g15610Os.116.1.S1_at4/111+8767676..8770069hypothetical protein
LOC_Os01g15620OsAffx.22940.2.S1_s_at10/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.3.S1_x_at9/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.2.S1_at8/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.1.S1_s_at6/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620Os.35344.3.S1_x_at4/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620Os.35344.18.S1_x_at4/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.5.S1_x_at3/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.31552.2.S1_at1/111+8772401..8777417transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20316.1.S1_at--521--5251Chr01:8751651..8751675 (25 bp)
GAATCTCTTCAAATAAGTTGCTGCC
LOC_Os01g15580
Os.20316.1.S1_at--1113--1231Chr01:8751666..8751690 (25 bp)
AGTTGCTGCCCAAAGTTGGTCTCGA
LOC_Os01g15580
Os.20316.1.S1_at--1146--8571Chr01:8751682..8751706 (25 bp)
TGGTCTCGATCCCAAAAGGTTTGCA
LOC_Os01g15580
Os.20316.1.S1_at--456--8011Chr01:8751722..8751746 (25 bp)
GGAGGAGTTAACTGTCACTGCCTGT
LOC_Os01g15580
Os.20316.1.S1_at--732--9691Chr01:8751736..8751760 (25 bp)
TCACTGCCTGTAGCTCTGAGTTGAA
LOC_Os01g15580
Os.20316.1.S1_at--884--7871Chr01:8751793..8751817 (25 bp)
GGTTCAAGATCTGTCATATCCCAAA
LOC_Os01g15580
Os.20316.1.S1_at--599--9491Chr01:8751826..8751850 (25 bp)
TCTCGTGACAGATAACTATGCAACT
LOC_Os01g15580
Os.20316.1.S1_at--147--7771Chr01:8751883..8751907 (25 bp)
GGTGAGTTGCAAGTTCATCTGATTA
LOC_Os01g15580
Os.20316.1.S1_at--658--6551Chr01:8751903..8751927 (25 bp)
GATTATGCTGAAGTTATCCTCTACT
LOC_Os01g15580
Os.20316.1.S1_at--553--10431Chr01:8751916..8751940 (25 bp)
TTATCCTCTACTCAATTTGTTCCCA
LOC_Os01g15580
Os.20316.1.S1_at--413--6711Chr01:8751934..8751958 (25 bp)
GTTCCCATCATGCATTGTCCTTGAA
LOC_Os01g15580
Target Sequence 
GAATCTCTTCAAATAAGTTGCTGCCCAAAGTTGGTCTCGATCCCAAAAGGTTTGCAACATTTGACTGCTCTGGAGGAGTT
AACTGTCACTGCCTGTAGCTCTGAGTTGAACGAAAACTGCAGGAAAGATACAGGCAAGGATTGGTTCAAGATCTGTCATA
TCCCAAACATNGTAATCTCGTGACAGATAACTATGCAACTTCTGTTGATCAATTAAACAAAAAAAAAGTCCTGGTGAGTT
GCAAGTTCATCTGATTATGCTGAAGTTATCCTCTACTCAATTTGTTCCCATCATGCATTGTCCTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis