Browse Element(s) Details


Os.20572.1.A1_at

Description gb:AK073756.1
DB_XREF= gi:32983779
TID=Os.20572.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20572 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067M13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067M13, full insert sequence.
FL= gb:AK073756.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2261010/11Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os01g247801/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22590Os.56004.1.S1_at11/113+12983522..12986948MtN3/saliva family protein, expressed
LOC_Os03g22600Os.56849.1.S1_at11/113+13003165..13005838transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g22600Os.56849.1.S1_x_at11/113+13003165..13005838transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g22610Os.20572.1.A1_at10/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22610OsAffx.27409.1.S1_x_at2/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22610Os.24682.1.A1_at1/113+13010076..13014845Peptidyl-tRNA hydrolase, putative, expressed
LOC_Os03g22620Os.20572.2.S1_at11/113+13014066..13024948Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g22620Os.52722.1.S1_at11/113+13014066..13024948Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os03g22634OsAffx.3297.1.S1_at11/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634Os.26852.1.A1_at11/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634OsAffx.6281.1.S1_at2/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634Os.12629.1.S2_at1/113+13035620..13050306terpene synthase 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0009416biological_processresponse to light stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0016131biological_processbrassinosteroid metabolism
GO:0004045molecular_functionaminoacyl-tRNA hydrolase activity
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20572.1.A1_at--655--6431Chr03:13014326..13014350 (25 bp)
GATCATCTAGGCATCTCATGTTTAC
LOC_Os03g22610
Os.20572.1.A1_at--950--10171Chr03:13014351..13014375 (25 bp)
TATAGGAATTCACTGCTGGCACATG
LOC_Os03g22610
Os.20572.1.A1_at--133--10091Chr03:13014406..13014430 (25 bp)
TAGGCTTGACGAACAGCTGCTTGAT
LOC_Os03g22610
Os.20572.1.A1_at--961--891Chr03:13014460..13014484 (25 bp)
AGGCGTCTTCGCTGCCTTGGTAGAA
LOC_Os03g22610
Os.20572.1.A1_at--738--4831Chr03:13014501..13014525 (25 bp)
GCTAAGTTGGCGACTCGGTTCACAG
LOC_Os03g22610
Os.20572.1.A1_at--756--8811Chr03:13014562..13014586 (25 bp)
TGATAGTTTTCCATGCGTCTTCGAC
LOC_Os03g22610
Os.20572.1.A1_at--1133--1251Chr03:13014588..13014612 (25 bp)
AGATTACTTATCACAGCCGTGGCTT
LOC_Os03g22610
Os.20572.1.A1_at--40--1131Chr03:13014620..13014644 (25 bp)
AGTGACATTGTGCTCCTTCATGTAG
LOC_Os03g22610
Os.20572.1.A1_at--768--1311NONE
AGAGGTGGCCATTTCTAGTTTGCCC
NONE
Os.20572.1.A1_at--404--2193Chr07:26828425..26828445 (21 bp)
ACACTTAATTAGTTACTCCCTCCAT
NONE
Os.20572.1.A1_at--792--3791Chr03:13014714..13014738 (25 bp)
CTCCCTCCATTTGAACTGACTAATA
LOC_Os03g22610
Target Sequence 
GATCATCTAGGCATCTCATGTTTACTATAGGAATTCACTGCTGGCACATGGAGTGTAGTATAATATCTAGATTATGGGGA
TAGGCTTGACGAACAGCTGCTTGATGATATTCATGCTGAGCTTGTTGAAGGTGTAGGCGTCTTCGCTGCCTTGGTAGAAG
AACATTATGCTCATCGCTAAGTTGGCGACTCGGTTCACAGCCGGCACAAGCGAGGAACGCTCAAAGCGTGCTTGATTGAT
AGTTTTCCATGCGTCTTCGACCAGATTACTTATCACAGCCGTGGCTTCCTCACCAGTGACATTGTGCTCCTTCATGTAGG
ACTCAACAGAGGTGGCCATTTCTAGTTTGCCCTTCCCGTGCTGTGACCAACAAACACTTAATTAGTTACTCCCTCCATTT
GAACTGACTAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20572.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis