Browse Element(s) Details


Os.2066.1.S1_a_at

Description gb:AB071805.1
DB_XREF= gi:20975252
GEN=PCF5
TID=Os.2066.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2066 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for transcription factor PCF5, complete cds.
PROD=transcription factor PCF5
FL= gb:AB071805.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1155011/11TCP family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11520Os.7731.1.S1_at11/111+6195960..6197201Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g11530OsAffx.10261.2.A1_at11/111+6205940..6207490hypothetical protein
LOC_Os01g11530Os.10626.4.A1_s_at11/111+6205940..6207490hypothetical protein
LOC_Os01g11530OsAffx.31752.1.S1_at2/111+6205940..6207490hypothetical protein
LOC_Os01g11530Os.40531.1.A1_x_at1/111+6205940..6207490hypothetical protein
LOC_Os01g11550Os.2066.1.S1_a_at11/111+6218442..6221131TCP family transcription factor containing protein, expressed
LOC_Os01g11550Os.2066.2.S1_x_at11/111+6218442..6221131TCP family transcription factor containing protein, expressed
LOC_Os01g11570Os.7905.1.S1_at11/111+6239311..6241681GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11570OsAffx.26077.1.S1_at5/111+6239311..6241681GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11580Os.37125.2.S1_x_at11/111+6244899..6250200DNA-binding bromodomain-containing protein, putative, expressed
LOC_Os01g11580OsAffx.23202.1.S1_x_at11/111+6244899..6250200DNA-binding bromodomain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0048366biological_processleaf development
GO:0009507cellular_componentchloroplast
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2066.1.S1_a_at--170--1131Chr01:6218821..6218845 (25 bp)
AGTGCACTACTACTGATGCTACTAC
LOC_Os01g11550
Os.2066.1.S1_a_at--472--5111Chr01:6218818..6218842 (25 bp)
GCACTACTACTGATGCTACTACATA
LOC_Os01g11550
Os.2066.1.S1_a_at--781--8571Chr01:6218784..6218808 (25 bp)
TGGTTGGTTGGTTTTCCATCGATCT
LOC_Os01g11550
Os.2066.1.S1_a_at--1060--10851Chr01:6218777..6218801 (25 bp)
TTGGTTTTCCATCGATCTCTTCTGC
LOC_Os01g11550
Os.2066.1.S1_a_at--778--10391Chr01:6218773..6218797 (25 bp)
TTTTCCATCGATCTCTTCTGCTGCT
LOC_Os01g11550
Os.2066.1.S1_a_at--423--9491Chr01:6218757..6218781 (25 bp)
TCTGCTGCTGCGCATGTCATTGGTT
LOC_Os01g11550
Os.2066.1.S1_a_at--116--4591Chr01:6218748..6218772 (25 bp)
GCGCATGTCATTGGTTTTTGTTTCA
LOC_Os01g11550
Os.2066.1.S1_a_at--843--10791Chr01:6218731..6218755 (25 bp)
TTGTTTCAAGAATTCACTCGGAGCT
LOC_Os01g11550
Os.2066.1.S1_a_at--535--1471Chr01:6218723..6218747 (25 bp)
AGAATTCACTCGGAGCTTCTTAGAA
LOC_Os01g11550
Os.2066.1.S1_a_at--1107--10511Chr01:6218719..6218743 (25 bp)
TTCACTCGGAGCTTCTTAGAATTAG
LOC_Os01g11550
Os.2066.1.S1_a_at--689--5911Chr01:6218711..6218735 (25 bp)
GAGCTTCTTAGAATTAGGCTTGTGA
LOC_Os01g11550
Target Sequence 
AGTGCACTACTACTGATGCTACTACATANCGGTTGGTTGGTTGGTTGGTTTTCCATCGATCTCTTCTGCTGCTGCGCATG
TCATTGGTTTTTGTTTCAAGAATTCACTCGGAGCTTCTTAGAATTAGGCTTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2066.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis