Browse Element(s) Details


Os.20817.1.S2_at

Description gb:AK066399.1
DB_XREF= gi:32976417
TID=Os.20817.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20817 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like protein kinase (P0483E09.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013063L14, full insert sequence.
FL= gb:AK067638.1 gb:AK066399.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0387011/11lectin receptor kinase 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03810Os.34827.1.S1_at11/117+1589211..1591595lectin receptor kinase 7, putative, expressed
LOC_Os07g03820Os.35253.1.S1_at11/117+1593659..1595913lectin receptor kinase 7, putative, expressed
LOC_Os07g03820Os.46721.1.S1_x_at1/117+1593659..1595913lectin receptor kinase 7, putative, expressed
LOC_Os07g03830Os.44541.1.A1_at11/117+1598169..1600184lectin receptor kinase 7, putative
LOC_Os07g03840Os.11936.1.S1_at11/117+1601323..1603677Protein kinase domain containing protein, expressed
LOC_Os07g03850Os.20817.5.A1_at11/117+1605113..1607113lectin protein kinase, putative, expressed
LOC_Os07g03860Os.23507.1.A1_at10/117+1608526..1610723Protein kinase domain containing protein, expressed
LOC_Os07g03870Os.20817.1.S1_at11/117+1611157..1614544lectin receptor kinase 7, putative, expressed
LOC_Os07g03870Os.20817.1.S2_at11/117+1611157..1614544lectin receptor kinase 7, putative, expressed
LOC_Os07g03880OsAffx.16071.1.S1_at11/117+1616813..1618891lectin receptor kinase 7, putative, expressed
LOC_Os07g03890OsAffx.28253.1.S1_at11/117+1621065..1627039lectin receptor kinase 7, putative
LOC_Os07g03890OsAffx.28253.2.S1_at11/117+1621065..1627039lectin receptor kinase 7, putative
LOC_Os07g03900OsAffx.5196.1.S1_at11/117+1629523..1631553Lectin receptor-type protein kinase, putative
LOC_Os07g03910NANA7+1635181..1636717Hexose carrier protein HEX6, putative
LOC_Os07g03920Os.45971.1.S1_x_at8/117+1638182..1641552lectin receptor kinase 7, putative, expressed
LOC_Os07g03920Os.45971.1.S1_at5/117+1638182..1641552lectin receptor kinase 7, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20817.1.S2_at--413--5231Chr07:1611704..1611728 (25 bp)
GAATATAGCTACACCAATCCCTGAA
LOC_Os07g03870
Os.20817.1.S2_at--1005--751Chr07:1611563..1611587 (25 bp)
ATGTCATCCTGACACCAGCATGAAA
LOC_Os07g03870
Os.20817.1.S2_at--833--5531Chr07:1611542..1611566 (25 bp)
GAAACACCAAGCTTGCAGACTTCCA
LOC_Os07g03870
Os.20817.1.S2_at--388--7951Chr07:1611469..1611493 (25 bp)
GGATAGCTTCGACAGATCACTAGTT
LOC_Os07g03870
Os.20817.1.S2_at--377--6451Chr07:1611455..1611479 (25 bp)
GATCACTAGTTGGTCTGTGTGCAAA
LOC_Os07g03870
Os.20817.1.S2_at--369--711Chr07:1611426..1611450 (25 bp)
ATGATGTCACTTTCTGTTTGTCCAG
LOC_Os07g03870
Os.20817.1.S2_at--665--7131Chr07:1611377..1611401 (25 bp)
GTCATCAATGCACTGGGAATTTGTC
LOC_Os07g03870
Os.20817.1.S2_at--627--311Chr07:1611345..1611369 (25 bp)
ATACCTTTGCTACTTACATCACTGG
LOC_Os07g03870
Os.20817.1.S2_at--940--10771Chr07:1611312..1611336 (25 bp)
TTGATTCCCAGTCAAGGATGCCGCC
LOC_Os07g03870
Os.20817.1.S2_at--443--5731Chr07:1611248..1611272 (25 bp)
GACTGTTGAGATATCCCATTGGCCA
LOC_Os07g03870
Os.20817.1.S2_at--91--6753Chr03:26755553..26755572 (20 bp)
GTTCATACCACTTGTTAGCTGCTAT
NONE
Target Sequence 
GAATATAGCTACACCAATCCCTGAAAGTTGGAAGGAAAAAAGAACAGGCTGAAAATTTAACACCAACTTCTGTCAATCTA
ATATCAGAAGTTCAGAACAAAGGTGGAATTCAGAGACTTCATTTTATTTCAGAATGTCCATATGTCATCCTGACACCAGC
ATGAAACACCAAGCTTGCAGACTTCCACCAGAACAAATGGCATTCTCAACAAGAGGGGAAAACACAGCCCAAGAAGGATA
GCTTCGACAGATCACTAGTTGGTCTGTGTGCAAAGAAAATGATGTCACTTTCTGTTTGTCCAGAGAAGACAAGGCAGACC
ATGCAAAGTCATCAATGCACTGGGAATTTGTCAGACAACATACCTTTGCTACTTACATCACTGGGTTGAAACTTGATTCC
CAGTCAAGGATGCCGCCTCCAAGTTCAGAAAAATATAGCTTCTGTATTAATATTCAGACTGTTGAGATATCCCATTGGCC
AATGTTTTGTTCATACCACTTGTTAGCTGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20817.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis