Browse Element(s) Details


Os.21180.1.S1_at

Description gb:AK107650.1
DB_XREF= gi:32992859
TID=Os.21180.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21180 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0071K18.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-F11, full insert sequence.
FL= gb:AK102800.1 gb:AK105930.1 gb:AK107650.1 gb:AK059322.1 gb:AK105623.1 gb:AF272860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g021303/11ankyrin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02080OsAffx.31479.5.S1_x_at11/115+591006..597274hypothetical protein
LOC_Os05g02080OsAffx.9194.2.S1_at3/115+591006..597274hypothetical protein
LOC_Os05g02090OsAffx.31479.1.S1_x_at11/115+598844..604260AT hook motif-containing protein, putative
LOC_Os05g02090OsAffx.31479.4.S1_x_at9/115+598844..604260AT hook motif-containing protein, putative
LOC_Os05g02100OsAffx.31422.1.S1_at10/115+604775..605726hypothetical protein
LOC_Os05g02110OsAffx.14499.1.S1_at11/115+607698..610496Protein phosphatase 2C containing protein, expressed
LOC_Os05g02120Os.7725.1.S1_at11/115+611761..616823pectinacetylesterase family protein, putative, expressed
LOC_Os05g02130OsAffx.23573.1.S1_s_at11/115+617592..621358ankyrin repeat family protein, putative, expressed
LOC_Os05g02130Os.21180.2.S1_x_at6/115+617592..621358ankyrin repeat family protein, putative, expressed
LOC_Os05g02130Os.21180.1.S1_at3/115+617592..621358ankyrin repeat family protein, putative, expressed
LOC_Os05g02140OsAffx.8823.1.S1_x_at1/115+626902..628647ANTH domain containing protein
LOC_Os05g02150Os.55878.1.S1_at11/115+636154..638076Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21180.1.S1_at--283--2211Chr05:617843..617867 (25 bp)
ACAAGCCAAGTGCTACTGTAGTTTG
LOC_Os05g02130
Os.21180.1.S1_at--24--5211Chr05:617762..617786 (25 bp)
GCAATTCCACGTCAGGCTTGGTGAT
LOC_Os05g02130
Os.21180.1.S1_at--1024--4871Chr05:617674..617698 (25 bp)
GCTTTGGCCATTCTATAGTCCATAT
LOC_Os05g02130
Os.21180.1.S1_at--997--10351NONE
TTTTTGATGGGTCATCACTCAGCCC
NONE
Os.21180.1.S1_at--345--4531NONE
GCCCCAAGGGCTGTTTTTACTTGTG
NONE
Os.21180.1.S1_at--1117--10351Chr05:617531..617555 (25 bp)
TTTTTACTTGTGCTCCCATTGGGTC
NONE
Os.21180.1.S1_at--22--3611Chr05:617515..617539 (25 bp)
CATTGGGTCCCAATAGACGCTGAAT
NONE
Os.21180.1.S1_at--612--8631NONE
TGGGTCGTTTTGTTCCTGGAGAGCA
NONE
Os.21180.1.S1_at--386--1351NONE
AGAGCAGTGACGTGCCTATAGGCCC
NONE
Os.21180.1.S1_at--627--9871NONE
TACAGTGATGAATAAGGTCCCCTCT
NONE
Os.21180.1.S1_at--577--3191Chr05:617360..617384 (25 bp)
CAATGTCATGTTAACTTCAGTCAAG
NONE
Target Sequence 
ACAAGCCAAGTGCTACTGTAGTTTGTTTTGNCCAGGNCACAGCNCACAACTTGGAATTTGGAAACCTTCCAAGTCATGGN
TGCAATTCCACGTCAGGCTTGGTGATNGACCTAGTAGTTCTTTTGCTTCTTGTGACGAACTGNCGATAACACGGANAGAT
ATTTGTGAAGCTTTGGCCATTCTATAGTCCATATGATCNCTCAAGCAAAAAATATNTTGGTGCCNCNCCTCNTCATGTGN
CAGAAACTAACTAATAATTTCAAAGTGCGATTAATTACTTTTTGATGGGTCATCACTCAGCCCCAAGGGCTGTTTTTACT
TGTGCTCCCATTGGGTCCCAATAGACGCTGAATTAGGAGACAATGGTTGGGTCGTTTTGTTCCTGGAGAGCAGTGACGTG
CCTATAGGCCCCCCTCCCCCTACAGTGATGAATAAGGTCCCCTCTCTTTTTTTTGTTTTCTTTTTTGAAAACGAGTGATG
AACAATGTCATGTTAACTTCAGTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis