Browse Element(s) Details


Os.21210.1.S1_at

Description gb:AK072995.1
DB_XREF= gi:32983018
TID=Os.21210.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023147F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023147F22, full insert sequence.
FL= gb:AK072995.1 gb:AK061586.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3823011/11membrane-associated zinc metalloprotease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g38190OsAffx.25410.1.S1_at10/113+21158714..21163393hypothetical protein
LOC_Os03g38200OsAffx.3432.1.S1_at8/113+21165682..21166479hypothetical protein
LOC_Os03g38210OsAffx.14939.1.S1_at10/113+21167479..21170171Myb-like DNA-binding domain containing protein
LOC_Os03g38210Os.57514.1.S1_x_at1/113+21167479..21170171Myb-like DNA-binding domain containing protein
LOC_Os03g38230Os.21210.1.S1_at11/113+21178638..21180566membrane-associated zinc metalloprotease family protein, expressed
LOC_Os03g38240OsAffx.25411.1.S1_at10/113+21183326..21186831hypothetical protein
LOC_Os03g38240OsAffx.9705.1.S1_x_at1/113+21183326..21186831hypothetical protein
LOC_Os03g38250OsAffx.13230.1.S1_at11/113+21188690..21192472NB-ARC domain containing protein
LOC_Os03g38260Os.4699.1.S1_at4/113+21193237..2119549060S ribosomal protein L19-3, putative, expressed
LOC_Os03g38270NANA3+21197437..21200430retrotransposon protein, putative, unclassified
LOC_Os03g38284OsAffx.20387.1.S1_x_at1/113+21201045..21206845transposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009536cellular_componentplastid
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21210.1.S1_at--1149--3891Chr03:21179473..21179497 (25 bp)
CTGGTCCAGTTGCAATCATTGCGGT
LOC_Os03g38230
Os.21210.1.S1_at--166--7411Chr03:21179396..21179420 (25 bp)
GTGATAAACCTCAACCTTGCTGCAA
LOC_Os03g38230
Os.21210.1.S1_at--975--2512Chr08:21519486..21519505 (20 bp)
AACTTGTTGCCATTGCCAGCATTAG
NONE
Os.21210.1.S1_at--176--3431Chr03:21179273..21179297 (25 bp)
CAGAGGATCATGTCGTCAGGTATAC
LOC_Os03g38230
Os.21210.1.S1_at--771--9911Chr03:21179251..21179275 (25 bp)
TACTGGTGGTACTCATGGTTGGCAT
LOC_Os03g38230
Os.21210.1.S1_at--170--10871Chr03:21179233..21179257 (25 bp)
TTGGCATGTTTCTGATTGTCCGCGA
LOC_Os03g38230
Os.21210.1.S1_at--165--2331Chr03:21179130..21179154 (25 bp)
AAAGTTTCAGACATTGGTTGGCCTC
LOC_Os03g38230
Os.21210.1.S1_at--66--4331Chr03:21179066..21179090 (25 bp)
CCATTTGTTGGGATTGCTCTAGCAT
LOC_Os03g38230
Os.21210.1.S1_at--354--1551Chr03:21179046..21179070 (25 bp)
AGCATTCTAGCTTCTTATACTGATC
LOC_Os03g38230
Os.21210.1.S1_at--222--3571Chr03:21179022..21179046 (25 bp)
CATAGGTCCTTGTATTGTTATCTGA
LOC_Os03g38230
Os.21210.1.S1_at--730--6671Chr03:21178984..21179008 (25 bp)
GTTGCATTTAGTCGCATTTCTAGAT
LOC_Os03g38230
Target Sequence 
CTGGTCCAGTTGCAATCATTGCGGTTGGCGCAGAGGTGGCCAGGTCAAGCGCCGAGGGCNTTGTTTCAGTTTGCGGCTGT
GATAAACCTCAACCTTGCTGCAATAAACTTGTTGCCATTGCCAGCATTAGACGGTGGGACGTTGGCNTTGATCCTTCTCG
AGGCGGCCCGTGGTGGGCAGAAGATCCCCCGTGAAATCGAACAGAGGATCATGTCGTCAGGTATACTGGTGGTACTCATG
GTTGGCATGTTTCTGATTGTCCGCGACACGCTCAATCTNGACTTCATCAAGGACATTTTGTGATANTTGGGTGATGAAAA
CTTGGATCACAGTTAGTGAAGTCAAAAGTTTCAGACATTGGTTGGCCTCTGAAAAGGTTAGTAGTTGTGCAATTGGGATT
CNTTTGCCCCATTTGTTGGGATTGCTCTAGCATTCTAGCTTCTTATACTGATCATAGGTCCTTGTATTGTTATCTGAATG
AANCTCTAATGTTGCATTTAGTCGCATTTCTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis