Browse Element(s) Details


Os.21287.1.S1_at

Description gb:AK070406.1
DB_XREF= gi:32980430
TID=Os.21287.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.21287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023054K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054K02, full insert sequence.
FL= gb:AK070406.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3209010/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32060OsAffx.29461.1.S1_at11/118+19742427..19744856U-box domain containing protein, expressed
LOC_Os08g32070NANA8+19748621..19749139amino acid transporter, putative
LOC_Os08g32080Os.8449.1.S1_at11/118+19751177..19755501Homeobox domain containing protein, expressed
LOC_Os08g32080Os.56903.1.S1_at11/118+19751177..19755501Homeobox domain containing protein, expressed
LOC_Os08g32090Os.21287.1.S1_at10/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32090Os.31771.2.S1_at1/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32090Os.16899.1.S1_at1/118+19765746..19774901DEAD/DEAH box helicase family protein, expressed
LOC_Os08g32100Os.51874.1.S1_at11/118+19780291..19785934transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g32100Os.25010.1.S1_at11/118+19780291..19785934transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g32110OsAffx.6005.1.S1_at10/118+19787693..19790532hypothetical protein
LOC_Os08g32120Os.12379.1.S1_at9/118+19795820..19796465expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004004molecular_functionATP-dependent RNA helicase activity
GO:0008026molecular_functionATP-dependent helicase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21287.1.S1_at--15--5371Chr08:19767305..19767329 (25 bp)
GAAGAGGGTGCATCCACGACAGGTA
LOC_Os08g32090
Os.21287.1.S1_at--1058--4971NONE
GCATCCACGACAGGTAGCCATCAAA
NONE
Os.21287.1.S1_at--1057--1411Chr08:19766272..19766296 (25 bp)
AGAAAACACACTGCAGTGGGACGGG
LOC_Os08g32090
Os.21287.1.S1_at--1000--9311Chr08:19766243..19766267 (25 bp)
TCGCTATATACCGAACGCCGACGTA
LOC_Os08g32090
Os.21287.1.S1_at--402--2611Chr08:19766230..19766254 (25 bp)
AACGCCGACGTACCGTCTGAGATTA
LOC_Os08g32090
Os.21287.1.S1_at--284--2351Chr08:19766170..19766194 (25 bp)
AAAGCAATGGATATTGCCCGCATGA
LOC_Os08g32090
Os.21287.1.S1_at--933--71Chr08:19766158..19766182 (25 bp)
ATTGCCCGCATGAAGAACAGATCCA
LOC_Os08g32090
Os.21287.1.S1_at--139--3351Chr08:19766089..19766113 (25 bp)
CACGATGGACCCTTGAAAGATGGCA
LOC_Os08g32090
Os.21287.1.S1_at--665--9111Chr08:19765881..19765905 (25 bp)
TGCTGCGCTATCAACAGCAGGTGCT
LOC_Os08g32090
Os.21287.1.S1_at--391--1531Chr08:19765866..19765890 (25 bp)
AGCAGGTGCTGTTTGCCTTCTCGTG
LOC_Os08g32090
Os.21287.1.S1_at--93--3791Chr08:19765847..19765871 (25 bp)
CTCGTGTATTCCAGTTTTGTTTGCT
LOC_Os08g32090
Target Sequence 
GAAGAGGGTGCATCCACGACAGGTAGCCATCAAAGAGGAAACAGAAAACACACTGCAGTGGGACGGGGGCGTCGCTATAT
ACCGAACGCCGACGTACCGTCTGAGATTAGAAATCCCGAACAAATACAGAAGAGCAGGCAGCAAAAAGCAATGGATATTG
CCCGCATGAAGAACAGATCCACAAAAGAGAGTAAATTCCAGAAATTCCAGAAGAACAACAGGAGGCACGATGGACCCTTG
AAAGATGGCAAATTCCAGAAGAACAGGAGACCGGATGGCAATGGAAAGAACAGGAGACCGGATGGNAATGGAAAGGGACG
GGGGAAAGGCAAAGGAAATGCAAATGGATTTGGTAAAGGGAAGGGAAAAATGAAAGGGAAGGGCACAAGGTGATTTGACG
AAGAAAATGTTATCCAAAGCACAGGAGAGGGGCTGCTGCGCTATCAACAGCAGGTGCTGTTTGCCTTCTCGTGTATTCCA
GTTTTGTTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis