Browse Element(s) Details


Os.21423.1.S1_at

Description gb:AK103794.1
DB_XREF= gi:32989003
TID=Os.21423.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21423 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033145O08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033145O08, full insert sequence.
FL= gb:AK121899.1 gb:AK099764.1 gb:AK103794.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3032011/11Nucleolar complex-associated protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g30290OsAffx.31780.2.S1_s_at6/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30290OsAffx.31780.2.S1_x_at2/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30290OsAffx.21663.1.S1_at1/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30290OsAffx.31780.1.S1_at1/116+17477779..17481218transposon protein, putative, unclassified
LOC_Os06g30300OsAffx.27879.1.S1_at10/116+17486640..17487153hypothetical protein
LOC_Os06g30310Os.18215.1.S1_at11/116+17487835..17500187Alpha-glucan water dikinase, chloroplast precursor, putative, expressed
LOC_Os06g30310OsAffx.10482.1.S1_x_at1/116+17487835..17500187Alpha-glucan water dikinase, chloroplast precursor, putative, expressed
LOC_Os06g30320Os.21423.1.S1_at11/116+17504130..17510949Nucleolar complex-associated protein, expressed
LOC_Os06g30330OsAffx.18105.3.S1_at11/116+17518054..17518602immediate-early fungal elicitor protein CMPG1, putative
LOC_Os06g30340NANA6+17522117..17523148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g30350Os.47130.4.A1_x_at1/116+17533154..17533486retrotransposon protein, putative, unclassified
LOC_Os06g30350Os.37083.2.S1_at1/116+17533154..17533486retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21423.1.S1_at--464--3071Chr06:17510379..17510403 (25 bp)
AATCATTTTGCGGTACTAAGAGGTA
LOC_Os06g30320
Os.21423.1.S1_at--376--6011Chr06:17510423..17510447 (25 bp)
GAGAGCTGAGCTGAACCACACGTTG
LOC_Os06g30320
Os.21423.1.S1_at--636--6631Chr06:17510444..17510468 (25 bp)
GTTGTCATCCATCAACTTGTACAAG
LOC_Os06g30320
Os.21423.1.S1_at--620--5591Chr06:17510553..17510577 (25 bp)
GAAATTTTTGCACACCAGGGACCAA
LOC_Os06g30320
Os.21423.1.S1_at--580--671Chr06:17510589..17510613 (25 bp)
ATGAACAATTTTGCCATACCCACTT
LOC_Os06g30320
Os.21423.1.S1_at--308--311Chr06:17510604..17510628 (25 bp)
ATACCCACTTTGTAGCTTATCGTAG
LOC_Os06g30320
Os.21423.1.S1_at--235--10151Chr06:17510621..17510645 (25 bp)
TATCGTAGCTTTTGGGTGTAACACA
LOC_Os06g30320
Os.21423.1.S1_at--971--9791Chr06:17510670..17510694 (25 bp)
TAAGCTCGTTCTATTTCCTGACATG
LOC_Os06g30320
Os.21423.1.S1_at--93--10371Chr06:17510698..17510722 (25 bp)
TTTTATTCTTGTTGCCTGGACCTAA
LOC_Os06g30320
Os.21423.1.S1_at--1036--8271Chr06:17510765..17510789 (25 bp)
GGCATGCTTGTGTTATCTATATATA
LOC_Os06g30320
Os.21423.1.S1_at--841--8971Chr06:17510800..17510824 (25 bp)
TGAACAATGCCATCCCCTATGCAAA
LOC_Os06g30320
Target Sequence 
AATCATTTTGCGGTACTAAGAGGTATCTCAGAGAATGAGAGATTGAGAGCTGAGCTGAACCACACGTTGTCATCCATCAA
CTTGTACAAGGAATACAAGAAGCAGAAGAAAAGCAGGAAATCAAAGGCTGTTAAGAAAAAGGTTTCAAGGGCTTAAGTTG
TGCTGCGTTTGGGGGAAATTTTTGCACACCAGGGACCAAAGGTGTGCAGAATGAACAATTTTGCCATACCCACTTTGTAG
CTTATCGTAGCTTTTGGGTGTAACACATTTGCAGTTCCAAGCATTTCTTTTTAAGCTCGTTCTATTTCCTGACATGTCCT
TTTATTCTTGTTGCCTGGACCTAACCAGGCTAACAAGTTTGCTGCCGCTGTACAAGATATAACAGTGGCATGCTTGTGTT
ATCTATATATATNNTGTTATGCATGAACAATGCCATCCCCTATGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis